PHOTOPHYSICAL BEHAVI0RS OF OLIGOMER BASED ON 1, 1′-BINAPHTHOL WITH 3, 3′-ACETYLENE SPACER*

The photophysical behaviors of the oligomer based on 1,1'-binaphthol with3,3'-acetylene spacer were investigated. The oligomer molecule has a naphthyl-acetylene-naphthyl effective conjugation segment. The atropic of the 1,1'-binaphthyl moiety led totwisted and rigid main chain in the oligomer. With the changes of the external environ-ment such as solvents used, solvent viscosity and ambient temperature, the wavelengthsof absorption and the intensities of fluorescence and absorption are changed slightly, butthe fluorescent intensity and quantum yield can be influenced. The luminescent behav-iors of the oligomer exhibit twisted intramolecular charge transfer characteristics, whichcould have a potential application in wavelength-stable light emitting material adaptableto ambient temperature and the solvents used in wide range.     

Influence of diffusion on the kinetics of excited-state association--dissociation reactions: comparison of theory and simulation

Several recent theories of the kinetics of diffusion influenced excited-state association--dissociation reactions are tested against accurate Brownian dynamics simulation results for a wide range of parameters. The theories include the relaxation time approximation (RTA), multiparticle kernel decoupling approximations and the so-called kinetic theory. In the irreversible limit, none of these theories reduce to the Smoluchowski result. For the pseudo-first-order target problem, we show how the RTA can be modified so that the resulting formalism does reduce correctly in the irreversible limit. We call this the unified Smoluchowski approximation, because it unites modern theories of reversible reactions with Smoluchowski's theory of irreversible reactions.     

Tuning Pore Size in Square‐Lattice Coordination Networks for Size‐Selective Sieving of CO2

Porous materials capable of selectively capturing CO₂ from flue‐gases or natural gas are of interest in terms of rising atmospheric CO₂ levels and methane purification. Size‐exclusive sieving of CO₂ over CH₄ and N₂ has rarely been achieved. Herein we show that a crystal engineering approach to tuning of pore‐size in a coordination network, [Cu(quinoline‐5‐carboxyate)₂]_n ( Qc‐5‐Cu ) ena+bles ultra‐high selectivity for CO₂ over N₂ (S_CN≈40 000) and CH₄ (S_CM≈3300). Qc‐5‐Cu‐sql‐β , a narrow pore polymorph of the square lattice ( sql ) coordination network Qc‐5‐Cu‐sql‐α, adsorbs CO₂ while excluding both CH₄ and N₂. Experimental measurements and molecular modeling validate and explain the performance. Qc‐5‐Cu‐sql‐β is stable to moisture and its separation performance is unaffected by humidity.     

Use of thin collodion films to prevent recoil-ion contamination of alpha-spectrometry detectors

Recoil ions from alpha-particle emission can contaminate surface-barrier detection systems. This contamination results in increased measurement uncertainty, and may require the replacement of expensive detectors. Disposable thin Collodion films are easily prepared and effectively retard the recoil ions when either directly applied to the surface of alpha-sources or as catcher foils between the source and the detector. The thin films are particularly effective for relatively low-level sources, but can sustain structural damage when exposed to high levels of recoil ions (tens of thousands per second) over extended periods of time.     

When does the Michaelis-Menten equation hold for fluctuating enzymes?

Enzymes are dynamic entities: both their conformation and catalytic activity fluctuate over time. When such fluctuations are relatively fast, it is not surprising that the classical Michaelis-Menten (MM) relationship between the steady-state enzymatic velocity and the substrate concentration still holds. However, recent single-molecule experiments have shown that this is the case even for an enzyme whose catalytic activity fluctuates on the 10(-4)-10 s range. The purpose of this paper is to examine various scenarios in which slowly fluctuating enzymes would still obey the MM relationship. Specifically, we consider (1) the quasi-static condition (e.g., the conformational fluctuation of the enzyme-substrate complex is much slower than binding, catalysis, and the conformational fluctuations of the free enzyme), (2) the quasi-equilibrium condition (when the substrate dissociation is much faster than catalysis, irrespective of the time scales or amplitudes of conformational fluctuations), and (3) the conformational-equilibrium condition (when the dissociation and catalytic rates depend on the conformational coordinate in the same way). For each of these scenarios, the physical meaning of the apparent Michaelis constant and catalytic rate constant is provided. Finally, as an example, the theoretical analysis of a recent single-molecule enzyme assay is considered in light of the perspectives presented in this paper.     

Building capacity for undergraduate education and training in computational molecular science: A collaboration between the MERCURY consortium and the Molecular Sciences Software Institute

The Molecular Sciences Software Institute (MolSSI) is an National Science Foundation (NSF) funded institute that focuses on improving software, education, and training in the computational molecular sciences. Through a collaboration with the Molecular Education and Research Consortium in Undergraduate computational chemistRY (MERCURY), the MolSSI has developed resources for undergraduate and other early career students to lay an educational foundation for the next generation of computational molecular scientists. The resources focus on introducing best practices in software engineering to students from the very start to make their software more useable, maintainable, and reproducible.     

Errors as Multistable Response Options

Five simulations mimicked benchmark phenomena of intact and dyslexic word naming. Initially, an iterative map was tuned to simulate the frequency × consistency interaction in skilled naming. Subsequently, two model parameters were changed, in turn, to produce the regularization error of surface dyslexia (PINT pronounced to rhyme with /mint/), absent pseudoword (BINT) naming of phonological dyslexia (words are named correctly; pseudowords are not), the semantic error of deep dyslexia (BUSH named as /tree/), and a dissociation in picture naming of spoken versus written responses (the spoken response to a picture of a bush is /tree/, but the written response is BUSH). All errors, except absent pseudoword naming, were simulated as transcritical bifurcations.     

Single-molecule FRET with diffusion and conformational dynamics

Under relatively mild conditions, we show how one can extract information about conformational dynamics from F?rster resonance energy transfer (FRET) experiments on diffusing molecules without modeling diffusion. Starting from a rigorous theory that does treat diffusion, we first examine when the single-molecule FRET efficiency distribution can be decomposed into the measured distribution of the total number of photons and the efficiency distribution of an immobilized molecule in the absence of shot noise. If the conformation does not change during the time the molecule spends in the laser spot, this is possible when (I) the efficiency is independent of the location in the laser spot and (II) the total number of photons does not depend on conformation. This decomposition is approximate when the conformation changes during the diffusion time. However, it does provide a simple framework for analyzing data. This is illustrated for a two-state system where the FRET efficiency distribution can be found analytically for all values of the interconversion rates. If the arrival time of each donor and acceptor photon can be monitored, we introduce an alternative procedure that allows one to rigorously extract the rates of conformational changes when the above two conditions hold. In this case, the pattern of colors in the photon trajectory depends solely on conformational dynamics. This can be exploited in the framework of statistical inference because the likelihood function, which must be optimized with respect to the model rate parameters, depends only on how the conformation changes during the interval between photons with specified colors.     

A rare earth metallocene containing a 2,2′-azopyridyl radical anion

Introducing spin onto organic ligands that are coordinated to rare earth metal ions allows direct exchange with metal spin centres. This is particularly relevant for the deeply buried 4f-orbitals of the lanthanide ions that can give rise to unparalleled magnetic properties. For efficacy of exchange coupling, the donor atoms of the radical ligand require high-spin density. Such molecules are extremely rare owing to their reactive nature that renders isolation and purification difficult. Here, we demonstrate that a 2,2′-azopyridyl (abpy) radical (S = 1/2) bound to the rare earth metal yttrium can be realized. This molecule represents the first rare earth metal complex containing an abpy radical and is unambigously characterized by X-ray crystallography, NMR, UV-Vis-NIR, and IR spectroscopy. In addition, the most stable isotope ⁸⁹Y with a natural abundance of 100% and a nuclear spin of ½ allows an in-depth analysis of the yttrium–radical complex via EPR and HYSCORE spectroscopy. Further insight into the electronic ground state of the radical azobispyridine-coordinated metal complex was realized through unrestricted DFT calculations, which suggests that the unpaired spin density of the SOMO is heavily localized on the azo and pyridyl nitrogen atoms. The experimental results are supported by NBO calculations and give a comprehensive picture of the spin density of the azopyridyl ancillary ligand. This unexplored azopyridyl radical anion in heavy element chemistry bears crucial implications for the design of molecule-based magnets particularly comprising anisotropic lanthanide ions.

Unambiguous characterization of the first 2,2′-azobispyridine radical-containing rare earth metal complex through X-ray crystallography, DFT computations, EPR and HYSCORE spectroscopy.