Incorporation of a minimal nucleotide into DNA

Abasic sites are amongst the most frequent DNA lesions and result from spontaneous hydrolysis of the glycosidic bond or from the removal of damaged nucleobases. These depurination events can also occur on free deoxyribonucleoside triphosphates present in cells and lead to the formation of an abasic site triphosphate of which very little is known. Herein, we report the synthesis and biochemical characterization of the minimal triphosphate dФTP. Unexpectedly, dФTP is tolerated by various DNA polymerases and the incorporation efficiency obeys the A-rule. Single incorporation of dФMP units were also observed opposite abasic sites and the addition of prosthetic molecules mimicking base-pairs do not seem to favor the process.     

Fire retardancy of polymer clay nanocomposites: Is there an influence of the nanomorphology?

The obvious aspect of nanodispersion and its role when investigating fire retardancy is not often clearly commented upon in the literature. Polymer clay nanocomposites can exhibit different morphologies and these might have consequences for their fire behaviour. Using solid state NMR to quantify the nanodispersion of organoclay in polyamide-6 (PA-6), we have prepared by melt blending PA-6/clay nanocomposite exhibiting different nanomorphologies. NMR results are consistent with transmission electron microscopy (TEM) images but the advantage of NMR is that it is representative of the whole sample and provides a precise quantification. PA-6 nanocomposites exhibit significant reduction of PHRR but the nanomorphology (exfoliation, intercalation and presence of tactoids) does not play any significant role. In other words, we have clearly shown that if nanodispersion is achieved, polymer/clay nanocomposite should exhibit fire retardant properties.     

DFT modeling of reactivity in an ionic liquid: How many ion pairs?

The modeling of reactivity in an ionic liquid is examined with DFT and DFT/MM calculations on the S(N)2 intramolecular rearrangement of the Z-phenylhydrazone of 3-benzoyl-5-phenyl-1,2,4-oxadiazole into 4-benzoylamino-2,5-diphenyl-1,2,3-triazole induced by amines. Experimental research has shown that the reaction occurs in 1-butyl-3-methylimidazolium tetrafluoroborate, and in conventional organic solvents such as acetonitrile with comparable rates. The structure for the reactants, transition states and products for the rate-determining step are optimized, and the energy barrier is computed in three different environments: gas phase, water solvent, and ionic liquid. The results are encouraging in describing the energy barrier in the ionic liquid. A simple model is formulated to explain the effect of the solvent in this particular process, and a procedure to study theoretically the reactivity in an ionic liquid is proposed.     

Water-soluble polyesters from long chain alkylesters of citric acid and poly(ethylene glycol)

Long chain aliphatic alcohols have been used as model compounds to develop a preparative method for a water-soluble material, which could be a carrier for triacontanol, a highly hydrophobic plant growth regulator. New polyesters from long chain aliphatic (C = 12, 18 and 22) mono-1-alkyl citrates and poly(ethylene glycol) were synthesized and characterized by NMR spectroscopy. The polyester containing the triacontyl moiety was obtained from mono-1-triacontyl citrate, which was synthesized from the corresponding alcohol extracted from the Agave fourcroydes. The molecular weight of the polyesters depends on experimental conditions during synthesis such as reaction time, atmosphere, catalyst concentration and temperature. The reaction is second order in the early stage of the polyester synthesis. The reaction rate constant is independent of the length of the aliphatic chain, but it decreases with increasing of the poly(ethylene glycol) employed. Turbidity measurements have been used to study the polyester solubility. Solubility characteristics were found to depend on the of poly(ethylene glycol), the aliphatic-chain length and the value of for the polyester. These preparations could potentially be used to release triacontanol.     

Electrostastic control of spontaneous curvature in catanionic reverse micelles

By means of small-angle neutron scattering and conductivity measurements, we study the microstructure of octylammoniumoctanoate/octane/water catanionic reverse microemulsions with an excess of anionic or cationic surfactant. Increasing the surface charge makes the microemulsion able to incorporate much more water than in the neutral case, up to 10 water molecules per surfactant. Even with charges in the surfactant film, wormlike micelles are present in the microemulsion domain. Along water dilution lines, the classical rod-to-sphere transition due to the minimization of the curvature energy of the rigid surfactant film is observed. When temperature is decreased, a re-entrant phase transition associated with the liquid-gas equilibrium of attractive cylinders is observed. Using the framework of the Tlusty-Safran theory, attraction could originate from junctions between wormlike reverse micelles. In any case, the spontaneous curvature of the catanionic surfactant film depends on both the temperature and the net charge, whatever the sign of the latter.     

Infrared study of hydrogen bonds involving N-heterocyclic bases and phenols

The hydrogen bond complexes between phenols and N-heteroaromatic bases 2,4,6-tri(2-pyridyl)-1,3,5-triazine, 2,2′,2′-terpyridine, quinoxaline, pyrido[2,3-b]pyrazine, pyzazino [2,3f]quinoxaline and 5-nitrozphenanthroline are investigated by infrared spectroscopy in 1,2-dichloroethane. The stability constants of the complexes involving N-heteroaromatic bases characterized by tow vicinal nitrogen atoms having lone pairs pointing to each other are higher than predicted from their basicity. Possible differences between protonation and hydrogen bond formation are discussed. Nheteroaromatic bases such as tri(2-pyridyl)-1,3,5-triazine or phenanthrolines cannot be considered as proton sponges but their behaviour is intermediate between that of the classical heteroaromatic bases and the proton sponges.     

Benzylic triflates prepared in‐situ: novel initiators for mono‐, bi‐ and trifunctional living poly(THF)s

Mono‐, bis‐, and tris(trifluoromethanesulfonate ester)s ((triflate ester)s) were prepared by the reaction of benzyl alcohol ( 1 ), 1,4‐bis(hydroxymethyl)benzene ( 2 ) and 1,3,5‐tris(hydroxymethyl)benzene ( 3 ) with trifluoromethanesulfonic anhydride in the presence of 2,6‐di‐tert‐butylpyridine. These benzylic triflate esters were applied in‐situ for the living polymerization of tetrahydrofuran (THF). The subsequent end‐capping reaction with a suitable nucleophile proceeded quantitatively to produce mono, bi‐ and, in particular, novel trifunctional telechelic poly(THF)s, respectively.     

New polymer structures based on vinyl ether polymerization

Sequential living cationic polymerization of octadecyl vinyl ether (ODVE) and methyl vinyl ether (MVE) was used for the preparation of amphiphilic ABA‐type block copolymers. The polymerization of ODVE was initiated with the trimethyl silyl iodide/1,1,3,3‐tetramethoxy propane/ZnI₂ system at 0°C in toluene. The living bifunctional polyODVE thus obtained was used as initiator for the polymerization of MVE. Below the LCST of polyMVE (37°C), the copolymers are amphiphiles. Above the LCST of polyMVE, the polyMVE‐blocks become hydrophobic and the amphiphilic nature of the block copolymer is lost. This was demonstrated by using the block copolymers as emulsifiers for water/decane mixtures. The emulsions were stable for several hours at room temperature, while the emulsion stability decreased to about 30 seconds at 40°C. PolyMVE‐α,ω‐bis‐methacrylates were obtained by end‐capping of living bifunctional polyMVE with 2‐hydroxyethyl methacrylate (HEMA). Copolymerization of these bis‐macromers with HEMA leads to segmented networks. The networks showed a reversible swelling/deswelling behavior in water as a function of temperature. This is caused by a change of the hydrophilicity of the polyMVE segments in the networks. Hexa(chloromethyl)melamine, combined with zinc chloride was found to be an efficient hexafunctional initiator for the living cationic polymerization of vinyl ethers. This simple initiating system opens new ways for the synthesis of endgroup‐functionalized star‐shaped poly(vinyl ethers).     

Influencing polymer properties by regiospecific complexation

ABA block-copolymers in which the A segments are capable of forming complexes and B is a non-complexing segment, have been used to prepare polymer materials with properties that can be changed by adding a complexing agent. The complex forming segments were poly(ethylene oxide) (PEO), linear polyethylenimine (LPEI) and poly(N-tert-butylethylenimine) (PTBEI). Commercially available liquid ABA block-copolymers, in which A is PEO and B is poly(propylene oxide), were investigated with high molar mass poly(acrylic acid) (PAA) as the complexing agent for PEO. It was found that the mixtures containing 3 to 7 wt.-% of PAA, showed a marked shear-thickening behavior leading eventually to gelation. This was attributed to the transformation of intramolecular polymer complexes, at low shear rates, to intermolecular complexes, at high shear rates, due to the chain stretching of PAA. ABA copolymers in which A is LPEI or PTBEI and B polytetra-hydrofuran (PTHF), were prepared. Complexation of these copolymers with low molecular weight poly-acids or PAA in polar and non-polar solvents as well as in bulk have been investigated. ABA copolymers in which A is PEO and B a PTHF segment were prepared. These block-copolymers show two melting points: one at appr. 55°C, due to the PEO segments, and one at appr. 30°C due to the PTHF. Upon addition of alkali metal salts such as sodium iodide or sodium thiocyanate, complexes with PEO are formed and as a consequence, the melting point of the PEO segments shifts to appr. 160°C. The complexed materials behave as thermoplastic elastomers up to that temperature.