Basis set effects on Cu(I) coordination in Cu-ZSM-5: a computational study

DFT calculations on the coordination of Cu⁺ to the framework oxygen atoms of Al-substituted ZSM-5 were performed by using combinations of different basis sets in order to investigate the dependence of the results on the adopted computational level. With low-end basis sets, a large basis set superposition error (BSSE) favors the coordination of Cu⁺ to three to four oxygen atoms of the framework, only two of which belong to the AlO₄ tetrahedron corresponding to the investigated T-site. More extended basis sets considerably lower the BSSE and favor the coordination of Cu⁺ to only two oxygen atoms of the AlO₄ tetrahedron. Upon interaction with NO, the Cu⁺ ion is always coordinated by two oxygen atoms of the AlO₄ tetrahedron, independently of the basis set adopted and of the coordination number before NO adsorption. The shift from three- to twofold coordination caused by the Cu⁺–NO interaction requires a deformation energy that lowers the final adsorption energy. Such an effect is relevant with low-end basis sets, whereas it is substantially absent with more extended basis sets, which favor the twofold coordination of Cu⁺ even before NO adsorption. As a result, high-end basis sets increase the NO interaction energy with respect to that calculated by low-end basis sets, in agreement with experiments and suggesting a possible re-interpretation of the catalytic properties of the investigated sites. Provided suitable scale factors are employed, the N–O stretching frequencies of adsorbed nitrogen oxide calculated by sufficiently extended basis sets turned out in fair agreement with experimental findings.     

Membrane mediated regulation in free peptides of HIV-1 gp41: minimal modulation of the hemifusion phase

Membrane-mediated structural modulation in two short fragments of the human HIV-1 envelope protein gp41 is demonstrated. Derived from the C-terminal membrane proximal external (MPE) and N-terminal fusion peptide proximal (FPP) regions, these peptides are widely separated in the primary sequence but form tertiary contacts during the intermediate (hemifusion) phase of HIV infection. The structural perturbations observed at the membrane interface offer evidence of rudimentary regulatory mechanisms operating in the free peptides which may be relevant in the biological system. No such regulatory phenomena were observed for the individual peptides in a membrane environment or between the peptides in aqueous solutions. Structure determination is made using a combination of circular and linear dichroism spectroscopy (supported by calorimetric measurements) and molecular dynamics simulations. Specifically, we show that these peptides interact locally without the conformational support of helical heptad repeat regions in native gp41 and that the modulation is not mutual with the FPP peptide operating as a primary regulator of the MPE-FPP interactions in the hemifusion phase.     

Amine-templated polymeric lanthanide formates: synthesis, characterization, and applications in luminescence and magnetism

The novel polymeric formates of general formula [(Fmd)Ln(III)(HCOO)(4)](∞) (Fmd(+) = NH(2)-CH(+)-NH(2); Ln = Eu (1), Gd (2), Tb (3), Dy (4)] were synthesized through solvothermal methods in formamide solutions. The compounds are isotructural; they crystallize in the orthorhombic C222(1) chiral space group. The coordination geometry at the metal centers is square antiprismatic (coordination number eight), with each formate ligand bridging adjacent lanthanide ions. The overall negative three-dimensional (3D) framework charge is balanced by the formamidinium cations sitting inside the channels along the a axis, forming extensive N-H···O hydrogen bonding with the surrounding cage. All the compounds have been characterized through single-crystal/powder X-ray diffraction, IR spectroscopy, and TG-MS analysis. Finally, their luminescence and magnetic properties have been assessed, leading to remarkable emission intensities, especially for the Tb(III) compound (Φ = 0.83), with corresponding lifetime decays in the micro (Dy) and millisecond (Tb, Eu) time scale. A weak but sizable antiferromagnetic interaction has been observed for the Gd(III) derivative.     

Infrared spectra and ultraviolet-tunable laser induced photochemistry of matrix-isolated phenol and phenol-d5

Monomers of phenol and its ring-perdeuterated isotopologue phenol-d(5) were isolated in argon matrices at 15 K. The infrared (IR) spectra of these species were recorded and analyzed. In situ photochemical transformations of phenol and phenol-d(5) were induced by tunable UV laser light. The photoproducts have been characterized by IR spectroscopy supported by theoretical calculations of the infrared spectra. The primary product photogenerated from phenol was shown to be the phenoxyl radical. The analysis of the progress of the observed phototransformations led to identification of 2,5-cyclohexadienone as one of the secondary photoproducts. Spectral indications of other secondary products, such as the Dewar isomer and the open-ring ketene, were also detected. Identification of the photoproducts provided a guide for the interpretation of the mechanisms of the observed photoreactions.     

On the asymptotic crack-tip stress fields in nonlocal orthotropic elasticity

The crack-tip stress fields in orthotropic bodies are derived within the framework of Eringen’s nonlocal elasticity via the Green’s function method. The modified Bessel function of second kind and order zero is considered as the nonlocal kernel. We demonstrate that if the localisation residuals are neglected, as originally proposed by Eringen, the asymptotic stress tensor and its normal derivative are continuous across the crack. We prove that the stresses attained at the crack tip are finite in nonlocal orthotropic continua for all the three fracture modes (I, II and III). The relative magnitudes of the stress components depend on the material orthotropy. Moreover, non-zero self-balanced tractions exist on the crack edges for both isotropic and orthotropic continua. The special case of a mode I Griffith crack in a nonlocal and orthotropic material is studied, with the inclusion of the T-stress term.     

Redox Imbalance and Mitochondrial Release of Apoptogenic Factors at the Forefront of the Antitumor Action of Mango Peel Extract

Today, an improved understanding of cancer cell response to cellular stress has become more necessary. Indeed, targeting the intracellular pro-oxidant/antioxidant balance triggering the tumor commitment to cell demise could represent an advantageous strategy to develop cancer-tailored therapies. In this scenario, the present study shows how the peel extract of mango—a tropical fruit rich in phytochemicals with nutraceutical properties—can affect the cell viability of three colon cancer cell lines (HT29, Caco-2 and HCT116), inducing an imbalance of cellular redox responses. By using hydro-alcoholic mango peel extract (MPE), we observed a consistent decline in thiol group content, which was accompanied by upregulation of MnSOD—a mitochondrial scavenger enzyme that modulates the cellular response against oxidative damage. Such an effect was the consequence of an early production of mitochondrial superoxide anions that appeared after just 30 min of exposure of colon cancer cells to MPE. The effect was accompanied by mitochondrial injury, consisting of the dissipation of mitochondrial membrane potential and a decrease in the level of proteins localized in the mitochondrial membrane—such as voltage-dependent anion-selective channel (VDAC1), mitofilin, and some members of Bcl-2 family proteins (Mcl-1, Bcl-2 and Bcl-X_L)—with the mitochondrial release of apoptogenic factors (cytochrome C and AIF). The analysis of the cytotoxic effects exerted by the different constituents of MPE (gallic acid, mangiferin, citric acid, quinic acid, pentagalloyl glucose, and methyl gallate) allowed us to identify those phytochemicals responsible for the observed anticancer effects, sustaining their future employment as chemopreventive or therapeutic agents.     

Collagen‐Reinforced Electrospun Silk Fibroin Tubular Construct as Small Calibre Vascular Graft

None of the replacements proposed in the literature for small‐calibre blood vessels (SCBV) fully satisfies the stringent requirements that these grafts have to fulfil. Here, an electrospun silk fibroin tubular construct is hybridized with type I collagen gel to produce a biomimetic SCBV graft with physiologically relevant compliance and burst pressure and optimal cytocompatibility. The hybridization of the two polymers results in the formation of a nanofibrillar hydrated matrix, where the collagen gel enhances the mechanical properties of the SF tubular construct and improves the early response of the material to in vitro cell adhesion and proliferation.

     

Circular dichroism beamline B23 at the Diamond Light Source

Synchrotron radiation circular dichroism (SRCD) is a well established technique in structural biology. The first UV‐VIS beamline, dedicated to circular dichroism, at Diamond Light Source Ltd, a third‐generation synchrotron facility in south Oxfordshire, UK, has recently become operational and it is now available for the user community. Herein the main characteristics of the B23 SRCD beamline, the ancillary facilities available for users, and some of the recent advances achieved are summarized.     

Common plants as alternative analytical tools to monitor heavy metals in soil

Background

Herbaceous plants are common vegetal species generally exposed, for a limited period of time, to bioavailable environmental pollutants. Heavy metals contamination is the most common form of environmental pollution. Herbaceous plants have never been used as natural bioindicators of environmental pollution, in particular to monitor the amount of heavy metals in soil. In this study, we aimed at assessing the usefulness of using three herbaceous plants (Plantago major L., Taraxacum officinale L. and Urtica dioica L.) and one leguminous (Trifolium pratense L.) as alternative indicators to evaluate soil pollution by heavy metals.

Results

We employed Inductively Coupled Plasma Atomic Emission Spectroscopy (ICP-AES) to assess the concentration of selected heavy metals (Cu, Zn, Mn, Pb, Cr and Pd) in soil and plants and we employed statistical analyses to describe the linear correlation between the accumulation of some heavy metals and selected vegetal species. We found that the leaves of Taraxacum officinale L. and Trifolium pratense L. can accumulate Cu in a linearly dependent manner with Urtica dioica L. representing the vegetal species accumulating the highest fraction of Pb.

Conclusions

In this study we demonstrated that common plants can be used as an alternative analytical tool for monitoring selected heavy metals in soil.

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