Synthesis of S,N-chelating heterocyclic thionates of palladium(II). Crystal structure of cis-[Pd(pym2S)(PPh3)2] (pym2S = pyrimidine-2-thionate)

The synthesis of mononuclear palladium(II) complexes containing chelating heterocyclic thionates is described. The new compounds of general formula cis-[Pd(RS-N)(L) _x ](ClO₄) [x = 2, L = PPh₃, RS-N = pyridine-2-thionate (py2S) (1), pyrimidine-2-thionate (pym2S) (2), imidazolidine-2-thionate (imzdS) (3), 1-methylimidazoline-2 thionate (mimzS) (4), 1,3-thiazoline-2-thionate (tzdS) (5); x = 1, L = dppe, RS-N = pyridine-2-thionate (py2S) (6), pyrimidine-2-thionate (pym2S) (7), imidazolidine-2-thionate (imzdS) (8), 1-methylimidazole-2 thionate (mimzS) (9) and 1,3-thiazoline-2-thionate (tzdS) (10)] were prepared by directly reacting the hydroxo-complexes [{Pd(PPh₃)₂(-OH) }₂](ClO₄)₂ and [ {Pd(dppe)(-OH) }₂](ClO₄)₂ with the corresponding heterocyclic thiones (RS-N)H. The complexes have been characterized by partial elemental analyses, conductance measurements and spectroscopic methods (I.r., FAB, ¹H- and ³¹P-n.m.r.). No evidence for monomer-dimer equilibrium was found in solution. The crystal structure of (2) has been determined by X-ray diffraction analysis.     

Toward true DNA base-stacking energies: MP2, CCSD(T), and complete basis set calculations

Stacking energies in low-energy geometries of pyrimidine, uracil, cytosine, and guanine homodimers were determined by the MP2 and CCSD(T) calculations utilizing a wide range of split-valence, correlation-consistent, and bond-functions basis sets. Complete basis set MP2 (CBS MP2) stacking energies extrapolated using aug-cc-pVXZ (X = D, T, and for pyrimidine dimer Q) basis sets equal to -5.3, -12.3, and -11.2 kcal/mol for the first three dimers, respectively. Higher-order correlation corrections estimated as the difference between MP2 and CCSD(T) stacking energies amount to 2.0, 0.7, and 0.9 kcal/mol and lead to final estimates of the genuine stacking energies for the three dimers of -3.4, -11.6, and -10.4 kcal/mol. The CBS MP2 stacking-energy estimate for guanine dimer (-14.8 kcal/mol) was based on the 6-31G(0.25) and aug-cc-pVDZ calculations. This simplified extrapolation can be routinely used with a meaningful accuracy around 1 kcal/mol for large aromatic stacking clusters. The final estimate of the guanine stacking energy after the CCSD(T) correction amounts to -12.9 kcal/mol. The MP2/6-31G(0.25) method previously used as the standard level to calculate aromatic stacking in hundreds of geometries of nucleobase dimers systematically underestimates the base stacking by ca. 1.0-2.5 kcal/mol per stacked dimer, covering 75-90% of the intermolecular correlation stabilization. We suggest that this correction is to be considered in calibration of force fields and other cheaper computational methods. The quality of the MP2/6-31G(0.25) predictions is nevertheless considerably better than suggested on the basis of monomer polarizability calculations. Fast and very accurate estimates of the MP2 aromatic stacking energies can be achieved using the RI-MP2 method. The CBS MP2 calculations and the CCSD(T) correction, when taken together, bring only marginal changes to the relative stability of H-bonded and stacked base pairs, with a slight shift of ca. 1 kcal/mol in favor of H-bonding. We suggest that the present values are very close to ultimate predictions of the strength of aromatic base stacking of DNA and RNA bases.     

Short synthesis of the CDEF ring system of lactonamycin

[reaction: see text]. A synthesis of the CDEF fragment of lactonamycin is achieved in eight steps (six pots) from the known and readily available anhydride 4 via a Diels-Alder reaction between tricycle 13 and 2,3-dimethylbenzoquinone.     

Thermal study of vermiculites and mica-vermiculite interstratifications

Simultaneous DTA-TG has been carried out on a set of natural vermiculite samples. Based on their dehydration behaviour the samples can be divided in two groups: (a) those with DTA endothermic peak temperatures at 140°–150°C and 240°–270°C (pure vermiculties) and (b) those with peak temperatures at 95°–115°C (vermiculite with mica or mica-vermiculite interstratifications). The low temperature at which the endothermic effect in group (b) appears is discussed on the basis of dilution due to the inert layers of mica, differences in chemical composition, and lowering of interlamellar water bond energy.     

Investigations of a novel process to the framework of benzo[c]cinnoline

A novel synthetic process leading to the framework of benzo[c]cinnoline has been discovered and investigated. The process is composed of two separate reactions, the first of which is a partial reduction of the nitro groups of the 2,2'-dinitrobiphenyl, a process that we believe proceeds via a SET mechanism to yield the hydroxyamino and nitroso groups. In the following step the cyclization takes place under formation of the -N=N- bond. We believe that this process take place via a radical mechanism through the nitroso radical anion. The novel process affords either benzo[c]cinnoline or benzo[c]cinnoline N-oxide, both in high yields, 93% and 91%, respectively. To obtain benzo[c]cinnoline, the reaction is conducted with an alcohol as solvent and an alkoxide as the base, while for benzo[c]cinnoline N-oxide, water is used as solvent with sodium hydroxide as the base. To establish the latter procedure, statistical experimental design and multivariate modeling were utilized to reveal the response surface for the reaction and to determine the optimal conditions for the reaction. A proposal for the complex reaction mechanism is given. During the corroboration of the mechanism, a new deoxygenation reaction for converting benzo[c]cinnoline N-oxide into benzo[c]cinnoline was discovered. The reaction is conducted by treating the N-oxide with sodium ethoxide at elevated temperature to achieve near-quantitative conversion into benzo[c]cinnoline in a yield of 96%.     

Numerical study of colloidal suspensions of soft spherical particles using the network method. 1. DC electrophoretic mobility

The electrophoretic mobility of a spherical particle coated with a uniformly charged permeable membrane and suspended in a general electrolyte solution is calculated numerically. The network simulation method used makes it possible to solve the problem without any restrictions on the values of the parameters such as the membrane thickness, fixed charge density in the membrane, viscous drag in the membrane, number and valence of the ionic species, and electrolyte concentration. The theoretical model used is similar to the one presented by Ohshima (H. Ohshima, J. Colloid Interface Sci. 228 (2000) 190), except for the inclusion in the force balance equation of an additional term corresponding to the force exerted by the liquid on the core of the moving particle. This inclusion is theoretically proven in the limiting case of a nonconducting suspending medium, in which the equation system can be analytically solved. The results obtained coincide with existing analytical expressions when the electrolyte concentration is high, the membrane is thick, and its resistance to the fluid flow is high.     

Chemometric study of selected polychlorinated biphenyls in ambient air of Madrid (Spain)

The formation of Fe(III) and Fe(II) chelates with pyridylazo and thiazolylazo reagents was examined. Optimum conditions for the formation of Fe(III) and Fe(II) chelates with 2-(5-bromo-2-pyridylazo)-5-diethylaminophenol (5-Br-PADAP) were in detail evaluated. The LC method for simultaneous separation of Fe(III) and Fe(II) ions as 5-Br-PADAP chelates was evaluated using the PEEK column with C18 e.c. stationary phase and acetonitrile+water (90:10, v/v) eluent containing the 1x10(-3) mol l(-1) C(12)H(25)SO(3)Na, the ion-pairing reagent, pH 3.4-3.6. The simultaneous determination of 20-500 mug l(-1) Fe(II) ions (detection at 555 nm) and 20-500 mug l(-1) Fe(III) ions (detection at 585 nm) as 5-Br-PADAP chelates (for both ions, detection limit, 18 mug l(-1) for 20 mul loop) was established. The chromatographic method was applied to the water analysis. Although the present method is able to determine both Fe(III) and Fe(II) ions, the Fe(III) ion was not detected in all water samples. The Fe(II) was detected only in fresh gathered oligocene water at the level of 135 mug l(-1). The present method was used to the investigation of the distribution of Fe(III)/Fe(II) ions in aqueous and micellar solutions after action of external, ultrasonic field.     

A Large Volume Injection Procedure for GC-MS Determination of PAHs and PCBs

A simple on-column injection system for large volume of liquid samples for the GC-MS determination of traces of PAHs and PCBs has been investigated. A deactivated fused silica capillary 20 m × 0.53 mm I.D. and 2 meters of an HP5 column (0.53 mm,1 m film thickness) were used as retention gaps. Injection volumes of 80 L for PAHs and 90 L for PCBs, allow determination of 5–50 ng L^–1 PAHs and 11–44 ng L^–1 PCBs in hexane solution with an RSD of < 10%. The method has been used for the determination of PCBs and PAHs in soil sample.     

Synthesis of 4-aryl-2,3,6,7-tetrahydro-1H-pyrimido[4,5-b][1,4]-diazepin-6-ones from 4,5-diamino-1H-pyrimidin-6-ones and 1-aryl-3-(dimethylamino)-1-propanones

The reaction of 1-aryl-3-(dimethylamino)-1-propanones 1 with one equivalent of 4,5-diamino-1H-pyrimidin-6-ones 2 , in acidic medium, leads to the formation of 4-aryl-2,3,6,7-tetrahydro-1H-pyrimido[4,5-b]-[1,4]diazepin-6-ones 3 . The structure elucidation of the products is based on detail nmr analysis of experiments such as ¹³C, ¹H and DEPT including selective ¹³C{¹H} decoupling experiments.     

Cyclopentane-1,3-dione bis(4-methylthiosemicarbazone) monohydrochloride as a spectrophotometric reagent for the determination of chlorate in perchloric acid medium

1,3-Cyclopentanedione bis(4-methylthiosemicarbazone) monohydrochloride produces colored solutions with chlorate ions in strongly acid medium. The yellow color obtained has been used to propose a spectrophotometric method of C10₃^? determination in the concentration range 0.5–6.0 ppm (molar absorptivity 1.26 × 10⁴ liters mol^?1 cm^?1 at a wavelength of 397 nm).