Convenient synthesis and diversification of dehydroalaninyl phosphinic peptide analogues

[structure: see text]. Dehydroalaninyl phosphinic dipeptide analogues were synthesized, via an efficient tandem Arbuzov addition/allylic rearrangement, in high yields. The susceptibility of the conjugate system to 1,4 nucleophilic additions was investigated. C-Elongation of the dipeptides was performed, and the efficiency of 1,4 addition to the resulting acrylamidic moiety was evaluated. Derivatization of such phosphinic templates is a powerful approach for rapid access to large number of phosphinic pseudopeptides bearing various side chains in the P1' position.     

Hybridization of mismatched or partially matched DNA at surfaces

We investigate how probe density influences hybridization for unlabeled target oligonucleotides that contain mismatched sequences or targets that access different binding locations on the immobilized probe. We find strong probe density effects influencing not only the efficiency of hybridization but also the kinetics of capture. Probe surfaces are used repeatedly, and the potentially large contributions of sample-to-sample variations in surface heterogeneity and nonspecific adsorption are addressed. Results of kinetic, equilibrium, and temperature-dependent studies, obtained using in-situ surface plasmon resonance (SPR) spectroscopy, show that hybridization for surface immobilized DNA is quite different from the well-studied solution-phase reaction. Surface hybridization depends strongly on the target sequence and probe density. Much of the data can be explained by the presence of steric crowding at high probe density; however, the behavior of mismatched sequences cannot be understood using standard models of hybridization even at the lowest density studied. In addition to unusual capture kinetics observed for the mismatched targets, we find that the binding isotherms can be fit only if a heterogeneous model is used. For mismatched targets, the Sips model adequately describes probe-target binding isotherms; for perfectly matched targets, the Langmuir model can be used.     

Sequence-dependent DNA immobilization: specific versus nonspecific contributions

We present results of the first systematic study on in situ sequence-dependent kinetics for short single-strand oligonucleotide surface immobilization. By measuring film coverage for both thiolated and nonthiolated homo-oligomers as a function of adsorption time, we determine the relative contribution of specific thiol-surface and nonspecific DNA-surface interactions to the overall mechanism of DNA-thiol attachment to gold. We find that sequence-dependent nonspecific surface interactions play a significant role in DNA-thiol immobilization, influencing not only the kinetics but also the extent of oligomer adsorption. For example, sequences that initially form strong, rapid nonspecific contacts with the surface hinder long-time thiol adsorption (i.e., poly(dA)-thiol). In contrast, sequences with nucleotides that initially bind slowly and weakly to the surface (i.e., poly(dT)-thiol) do not obstruct further thiol adsorption, resulting in higher film coverage and Langmuir immobilization kinetics. This view of the DNA-thiol immobilization mechanism is further supported by sequence-dependent rinsing losses observed for thiolated DNA strands but not for analogous nonthiolated strands. Nonthiolated strands contact the surface strongly in a more horizontal orientation, whereas thiolated strands attain a more upright orientation that allows vertical DNA-DNA base-stacking. The results clearly illustrate the importance and interplay of competitive specific and nonspecific forces in forming DNA-thiol films. The specific coverage attained and the time dependence of the adsorption process depend on the prevailing sequence composition.     

Synthesis and characterization of hyperbranched amphiphilic block copolymers prepared via self‐condensing RAFT polymerization

Four families of hyperbranched amphiphilic block copolymers of styrene (Sty, less polar monomer) and 2‐vinylpyridine (2VPy, one of the two more polar monomers) or 4‐vinylpyridine (4VPy, the other polar monomer) were prepared via self‐condensing vinyl reversible addition‐fragmentation chain transfer polymerization (SCVP‐RAFT). Two families contained 4VPy as the more polar monomer, one of which possessing a Sty‐b‐4VPy architecture, and the other possessing the reverse block architecture. The other two families bore 2VPy as the more polar monomer and had either a 2VPy‐b‐Sty or a Sty‐b‐2VPy architecture. Characterization of the hyperbranched block copolymers in terms of their molecular weights and compositions indicated better control when the VPy monomers were polymerized first. Control over the molecular weights of the hyperbranched copolymers was also confirmed with the aminolysis of the dithioester moiety at the branching points to produce linear polymers with number‐average molecular weights slightly greater than the theoretically expected ones, due to recombination of the resulting thiol‐terminated linear polymers. The amphiphilicity of the hyperbranched copolymers led to their self‐assembly in selective solvents, which was probed using atomic force microscopy and dynamic light scattering, which indicated the formation of large spherical micelles of uniform diameter. © 2015 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2015 , 53, 1310–1319     

Synthesis of amphoteric polystyrene particles using mixed initiators

The synthesis of amphoteric polystyrene latex particles, using a mixture of cationic (amidinium based) and anionic (carboxylic acid based) initiators in a surfactant-free emulsion polymerization reaction is investigated; this extends work described in an earlier paper by Bolt et al. Electrophoretic mobility measurements show the effect of the initiator concentration ratio on the isoelectric point (IEP) of the particles. A good correlation with theoretical predictions is obtained. Particle size and polydispersity are determined as a function of the lag time between the addition of each initiator. An increase in particle size and polydispersity is observed at short lag times. It is shown that this is due to the ratio of the cationic to anionic surface charge approaching unity during the reaction. At long lag times an increase in polydispersity may occur due to late-stage, secondary nucleation upon addition of the second initiator. Increasing the reaction pH to reduce the degree of ionization of the cationic initiator greatly reduces the polydispersity and has a significant effect on the IEP of the particles. This effect is ascribed to the burial of a fraction of the neutral amidine groups below the particle surface due to their increased solubility in the monomer. Slow addition of the second initiator was found to reduce the polydispersity of the particles, while maintaining an IEP value consistent with that expected for the ratio of initiators added.     

Stereochemistry of the bucherer-bergs reaction and a modified strecker reaction on tetrahydro-2H-pyran-3-ones

The stereochemical aspects of the Bucherer-Bergs reaction and a modified Strecker reaction on tetrahydro-2H-pyran-3-one derivatives have been studied in details through the use of several nmr techniques. It was found that, in both reactions, the orientation of the substituents introduced on C-3 of the pyran ring, depends from the number and nature of the substituents on the neighbouring C-2 atom.     

Cracked orthotropic strip with clamped boundaries

The stress intensity factor at the tip of a semi-infinite crack in an orthotropic infinite strip was determined. Clamped strip boundaries were considered.     

On the super-Rayleigh/subseismic elastodynamic indentation problem

The elastodynamic super-Rayleigh/subseismic indentation paradox is examined in this paper. Both the Craggs/Roberts steady-state problem and the Robinson/Thompson transient problem are reconsidered. Certain features of these solutions are discussed from a new point of view, by considering asymptotics at the end of the contact region, the influence of contact inequalities, energetics of the process and existence/uniqueness.     

Sh surface Waves in a Homogeneous Gradient-Elastic Half-Space with Surface Energy

The existence of SH surface waves in a half-space homogeneous material (i.e. anti-plane shear wave motions which decay exponentially with the distance from the free surface) is shown to be possible within the framework of the generalized linear continuum theory of gradient elasticity with surface energy. As is well-known such waves cannot be predicted by the classical theory of linear elasticity for a homogeneous half-space, although there is experimental evidence supporting their existence. Indeed, this is a drawback of the classical theory which is only circumvented by modelling the half-space as a layered structure (Love waves) or as having non-homogeneous material properties. On the contrary, the present study reveals that SH surface waves may exist in a homogeneous half-space if the problem is analyzed by a continuum theory with appropriate microstructure. This theory, which was recently introduced by Vardoulakis and co-workers, assumes a strain-energy density expression containing, besides the classical terms, volume strain-gradient and surface-energy gradient terms. This revised version was published online in August 2006 with corrections to the Cover Date.