Jet cooled NO2 intra cavity laser absorption spectroscopy (ICLAS) between 11200 and 16150 cm

We have combined the high sensitivity of the ICLAS technique with the rotational cooling effect of a slit jet expansion in order to observe and to understand the visible and near infrared NO₂ spectrum. By this way, an equivalent absorption pathlength of several kilometers through rotationally cooled molecules has been achieved. Due to the vibronic interaction between the two lowest electronic states, ²A₁ and à ²B₂, this spectrum is vibronically dense and complex. Moreover, the dense room temperature rotational structure is perturbed by additional rovibronic interactions. In contrast, the rotational analysis of our jet cooled spectrum is straightforward. The NO₂ absorption spectrum is vanishing to the IR but, owing to the high sensitivity of the ICLAS technique, we have been able to record the NO₂ spectrum down to 11200 cm⁻¹ with a new Ti:sapphire ICLAS spectrometer. As a result 249 ²B₂ vibronic bands have been observed (175 cold bands and 74 hot bands) in the 11200–16150 cm⁻¹ energy range. Due to the cooling effect of the slit jet we have reduced the rotational temperature down to about 12 K and at this temperature the K = 0 subbands are dominant. Consequently, we have analysed only the K = 0 manifold for N 7 of each vibronic band. The dynamical range of the band intensities is about one thousand. Due to the strong vibronic interaction between the ²A₁ and à ²B₂ electronic states, we observed not only the a₁ vibrational levels of the à ²B₂ state but also the b₂ vibrational levels of the ²A₁ state interacting with the previous ones. By comparison with the calculated density of states, we conclude that we have observed about 65% of the total number of ²B₂ vibronic levels located in the studied range. However, there are more missing levels in the IR because of the weakness of the spectrum in this range. The correlation properties of this set of vibronic levels have been analysed calculating the power spectrum of the absorption stick spectrum which displays periodic motions: the dominant period, at 714 ± 20 cm⁻¹, corresponds to the bending motion of the à ²B₂ state. The other observed periods remain unassigned. In contrast the next neighbor spacing distribution (NNSD) shows a strong level repulsion, i.e. a manifestation of quantum chaos. These two observations, apparently contradictory, can be rationalized as follows: the short time dynamics, for t < 10⁻¹² s, is “regular” while for longer times the dynamics becomes “chaotic”. We suggest that this behavior may be observed directly with a pump and probe fs laser experiment.     

Molecular orbital studies on the conformation of GABA (γ-aminobutyric acid)

In distinction to Extended Hückel Theory which predicts as the most stable conformation of free zwitterionic GABA a totally extended form, PCILO and SCF ab initio studies show that the intrinsically preferred conformation of the isolated molecule is a highly folded one, resulting from strong interactions between the two charged ends. Computations are also carried out for hydrated GABA in the supermolecule approach allowing moreover for the flexibility of binding of some of the water molecules of the first hydration shell. They predict the coexistence in solution of a large number of conformations showing different degrees of folding (or extension), a result confirmed by recent NMR studies. This and a number of similar results show that we have to adapt our thinking on the role of conformations in pharmacological activity to this situation, which was frequently obscured by the more abundant results of X-ray crystallography yielding a single conformation.     

Concise synthesis of ether analogues of lysobisphosphatidic acid

We describe a versatile, efficient method for the preparation of ether analogues of (S,S)-lysobisphosphatidic acid (LBPA) and its enantiomer from (S)-solketal. Phosphorylation of a protected sn-2-O-octadecenyl glyceryl ether with 2-cyanoethyl bis-N,N-diisopropylamino phosphine and subsequent deprotection generated the bisether LBPA analogues. By simply changing the sequence of deprotection steps, we obtained the (R,R)- and (S,S)-enantiomers of 2,2'-bisether LBPA. An ELISA assay with anti-LBPA monoclonal antibodies showed that the bisether LBPAs were recognized with the same affinity as the natural 2,2'-bisoleolyl LBPA. [reaction: see text]     

Characterization of peptides by liquid chromatography/electrospray ionization mass spectrometry using silver nitrate as a post-column complexant

Two model peptides, des-Arg1-bradykinin (DAB) and bradykinin (B), were cationized by Ag+ after their separation by reversed-phase liquid chromatography (RPLC) prior to mass spectrometry (MS). Silver nitrate solution was used as a post-column reagent. The RPLC and MS experimental conditions were optimized using flow injection in order to obtain sufficiently abundant silver adducts to permit MS/MS experiments. The use of water-methanol with 0.1% formic acid as mobile phase allowed a good chromatographic separation of the two peptides with a polymeric stationary phase and sufficiently abundant silver-containing adducts, [M + Ag + H]2+ and [M + 2Ag]2+. The gas-phase dissociation of [DAB + Ag + H]2+ and [DAB + 2Ag]2+ led to interpretable mass spectra during the on-line cationization experiment. Most of the ions obtained by dissociating [DAB + Ag + H]2+ and [DAB + 2Ag]2+ species are silver-containing ions but the ions produced depend on the parent. The ions coming from the dissociation of the doubly charged silver adducts [DAB + Ag + H]2+ or [DAB + 2Ag]2+ are of interest compared with those coming from the singly charged silver species or doubly charged protonated species. The fragmentation of the doubly charged silver adducts provides ions over the entire mass range. Although the presence of several prolines in des-Arg1-bradykinin prevents the formation of some expected ions, the observation of triplets [an-H + Ag]+, [bn-H + Ag]+ and [bn + OH + Ag]+ produced by the dissociation of on-line Ag(+)-cationized peptides could contribute to greater success of automatic sequencing of peptides.     

Cation-controlled self-assembly of a hexameric europium wheel

The simple asymmetric tetradentate ligand 2,2':6',2' '-terpyridine-6-carboxylic acid leads to the self-assembly of the first europium nanowheel containing europium ions in two different coordination environments. Moreover the self-assembly of bis(terpyridinecarboxylate) europium species to form a hexameric wheel capable of strongly binding LnIII cations is controlled by the ligand/cation ratio.     

Synthesis of corroles bearing up to three different meso substituents

[reaction: see text] We have developed a new method that affords regioisomerically pure corroles possessing up to three different substituents at the meso positions. The corrole formation reaction involves the acid-catalyzed condensation of a dipyrromethane-dicarbinol with pyrrole followed by oxidation with DDQ. ABC-Type corroles were synthesized for the first time according to this procedure.     

Identification of a series of C25-C40 acyclic isoprenoid hydrocarbons in crude oils

The identification of acyclic isoprenoid hydrocarbons in organic extracts of geological samples and particularly in petroleum deserves a great interest from the biological origin of the sedimentary organic matter and the understanding of geochemical processes.     

Primary photodamage sites and mitochondrial events after Foscan photosensitization of MCF-7 human breast cancer cells

To determine the initial photodamage sites of Foscan-mediated photodynamic treatment, we evaluated the enzymatic activities in selected organelles immediately after light exposure of MCF-7 cells. The measurements indicated that the enzymes located in the Golgi apparatus (uridine 5'-diphosphate galactosyl transferase) and in the endoplasmic reticulum (ER) (nicotinamide adenine dinucleotide [reduced] [NADH] cytochrome c [cyt c] reductase) are inactivated by the treatment, whereas mitochondrial marker enzymes (cyt c oxidase and dehydrogenases) were unaffected. This indicates that the ER and the Golgi apparatus are the primary intracellular sites damaged by Foscan-mediated PDT in MCF-7 cells. We further investigated whether the specific mitochondria events could be associated with Foscan photoinduced cell death. The dose response profiles of mitochondrial depolarization and cytochrome c release immediately after Foscan-based PDT were very different from that of overall cell death. By 24 h post-PDT the fluence dependency was strikingly similar for both mitochondrial alterations and cell death. Therefore, although mitochondria are not directly affected by the treatment, they can be strongly implicated in Foscan-mediated MCF-7 cell death by late and indirect mechanism.     

Equilenin-2'-deoxynucleoside adducts: analysis with nano-liquid chromatography coupled to nano-electrospray tandem mass spectrometry

The interaction of 4-hydroxy metabolites of estrogens with DNA leads to the formation of DNA adducts. These adducts are believed to play an important role in the incidence of breast and endometrial cancer. In order to be able to analyze these adducts in in vivo samples a method based upon the coupling of miniaturized liquid chromatography (LC) to electrospray tandem mass spectrometry (ES-MS/MS) was developed for the analysis of the adducts formed with 4-hydroxyequilenin. In vitro synthesized adducts obtained by the reaction of 4-hydroxyequilenin with the main 2'-deoxynucleosides were separated on a Hypersyl C(18) BDS nano-HPLC column (15 cm x 75 microm i.d.) at a flow-rate of 300 nl min(-1) using gradient elution with CH(3)OH--0.2% CH(3)COOH in H(2)O. The column was coupled, in combination with a column switching system, to a nano-electrospray interface. Analysis of the low- and high-resolution low-energy collision-activated dissociation product ion spectra of normal and deuterated adducts supported earlier data demonstrating equilenin to form different isomeric adducts, except with thymidine, for which no adducts were found. The nano-HPLC column-switching ES-MS system was tested for its sensitivity on a triple-quadrupole instrument, and detection limits down to 197 fg in the single reaction monitoring mode were obtained for semi-preparatively isolated equilenin--2'-deoxyguanosine adduct.