Searching for signals in the noise: metabolomics in chemical ecology

Chemically mediated interactions between organisms influence ecosystem structure, making it crucial for ecologists to understand these interactions. Advances in chemical ecology have often been closely linked to advances in analytical chemistry techniques. One recent development is the use of metabolomics to address questions in chemical ecology. Although metabolomics has much to offer this field, it is not without drawbacks. Here we consider how metabolomics techniques can supplement the traditional bioassay-guided fractionation approach to chemical ecology. We focus on specific examples that illustrate the advantages that metabolomic methods can provide over other methods in order to understand chemically mediated interactions between organisms.     

Morphology-controlled nonaqueous synthesis of anisotropic lanthanum hydroxide nanoparticles

The preparation of lanthanum hydroxide and manganese oxide nanoparticles is presented, based on a nonaqueous sol-gel process involving the reaction of La(OiPr)₃ and KMnO₄ with organic solvents such as benzyl alcohol, 2-butanone and a 1:1 vol. mixture thereof. The lanthanum manganese oxide system is highly complex and surprising results with respect to product composition and morphology were obtained. In dependence of the reaction parameters, the La(OH)₃ nanoparticles undergo a shape transformation from short nanorods with an average aspect ratio of 2.1 to micron-sized nanofibers (average aspect ratio is more than 59.5). Although not directly involved, KMnO₄ plays a crucial role in determining the particle morphology of La(OH)₃. The reason lies in the fact that KMnO₄ is able to oxidize the benzyl alcohol to benzoic acid, which presumably induces the anisotropic particle growth in [0 0 1] direction upon preferential coordination to the ±(1 0 0), ±(0 1 0) and ±(−110) crystal facets. By adjusting the molar La(OiPr)₃-to-KMnO₄ ratio as well as by using the appropriate solvent mixture it is possible to tailor the morphology, phase purity and microstructure of the La(OH)₃ nanoparticles. Postsynthetic thermal treatment of the sample containing La(OH)₃ nanofibers and β-MnOOH nanoparticles at the temperature of 800 °C for 8 h yielded polyhedral LaMnO₃ and worm-like La₂O₃ nanoparticles as final products.     

A Highly Reactive Geminal P/B Frustrated Lewis Pair: Expanding the Scope to C−X (X=Cl,Br) Bond Activation

The geminal frustrated Lewis pair tBu₂PCH₂B(Fxyl)₂ ( 1 ; Fxyl=3,5‐(CF₃)₂C₆H₃) is accessible in 65 % yield from tBu₂PCH₂Li and (Fxyl)₂BF. According to NMR spectroscopy and X‐ray crystallography, 1 is monomeric both in solution and in the solid state. The intramolecular P ??? B distance of 2.900(5) Å and the full planarity of the borane site exclude any significant P/B interaction. Compound 1 readily activates a broad variety of substrates including H₂, EtMe₂SiH, CO₂/CS₂, Ph₂CO, and H₃CCN. Terminal alkynes react with heterolysis of the C?H bond. Haloboranes give cyclic adducts with strong P?BX₃ and weak R₃B?X bonds. Unprecedented transformations leading to zwitterionic XP/BCX₃ adducts occur on treatment of 1 with CCl₄ or CBr₄ in Et₂O. In less polar solvents (C₆H₆, n‐pentane), XP/BCX₃ adduct formation is accompanied by the generation of significant amounts of XP/BX adducts. FLP 1 catalyzes the hydrogenation of PhCH=NtBu and the hydrosilylation of Ph₂CO with EtMe₂SiH.     

Structure–Property Relationships in Click‐Derived Donor–Triazole–Acceptor Materials

To shed light on intramolecular charge‐transfer phenomena in 1,2,3‐triazole‐linked materials, a series of 1,2,3‐triazole‐linked push–pull chromophores were prepared and studied experimentally and computationally. Investigated modifications include variation of donor and/or acceptor strength and linker moiety as well as regioisomers. Photophysical characterization of intramolecular charge‐transfer features revealed ambipolar behavior of the triazole linker, depending on the substitution position. Furthermore, non‐centrosymmetric materials were subjected to second‐harmonic generation measurements, which revealed the high nonlinear optical activity of this class of materials.     

Nucleophilic Transfer Reactions of the [Si(C2F5)3]− Moiety

The tris(pentafluoroethyl)silanide anion is accessible by the deprotonation of Si(C₂F₅)₃H at low temperatures. Subsequent quenching of the resulting salt‐like compounds with suitable electrophiles, such as transition‐metal complexes or Group 14 element halides, leads to a plethora of novel tris(pentafluoroethyl)silane derivatives. This underlines the versatility of Li[Si(C₂F₅)₃] as a powerful nucleophilic transfer reagent.     

Mechanistic insights into stereoselective catalysis-the effects of counterions in a CuII-bissulfoximine-catalyzed Diels-Alder reaction

The initial steps of an enantioselective Diels-Alder reaction catalyzed by a CuII-bissulfoximine complex were followed by EXAFS (EXAFS=extended X-ray absorption fine structure), EPR (EPR=electron paramagnetic resonance) spectroscopy (CW-EPR, FID-detected EPR, pulse ENDOR, HYSCORE; CW=continuous wave; ENDOR=electron nuclear double resonance; HYSCORE=hyperfine sublevel correlation; FID=free induction decay), and UV-visible spectroscopy. The complexes formed between the parent CuX2 (X=Cl-, Br-, TfO-, SbF6-) salts, the chiral bissulfoximine ligand (S,S)-1, and N-(1-oxoprop-2-en-1-yl)oxazolidin-2-one (2) as the substrate in CH2Cl2 were investigated in frozen and fluid solution. In all cases, penta- or hexacoordinated CuII centers were established. The complexes with counterions indicating high stereoselectivity (TfO- and SbF6-) reveal one unique species in which substrate 2 binds to pseudoequatorial positions (via O atoms), shifting the counterions to axial locations. On the other hand, those lacking stereoselectivity (X=Cl- and Br-) form two species in which the parent halogen anions remain at equatorial positions preventing the formation of geometries compatible with those found for X=TfO- and SbF6-.     

Solid-phase synthesis of metal-complex containing peptides

We report the synthesis of Fmoc protected single amino acid chelates (SAAC) and their metal complexes. The modified amino acids are suitable for solid-phase peptide synthesis. The use of 4-hydroxymethylbenzoic acid AM (HMBA-AM) resin allows the nucleophilic cleavage of the peptide-metal complexes from the resin without decomplexation.     

Solvent effects on the UV-visible absorption spectrum of benzophenone in water: a combined Monte Carlo quantum mechanics study including solute polarization

The entire ultraviolet-visible absorption spectrum of benzophenone in water is studied and compared with the same spectrum in gas phase. Five transitions are considered, and the corresponding solvatochromic shifts are obtained and compared to experiment. Using a sequential procedure of Monte Carlo simulations and quantum mechanical calculations, liquid configurations were generated and an averaged spectrum of the solution was calculated. The solute polarization was included by an iterative procedure where the atomic charges of the solute were obtained as an average with the solvent distribution. The calculated average dipole moment of benzophenone in water, with MP26-31++G(d,p), converges to the value of 5.84+/-0.05 D, 88% larger than the gas-phase value of 3.11 D. Using 100 statistically uncorrelated configurations and solvation shells with 235 explicit water molecules selected by a minimum-distance distribution of solvent shells, instead of the usual radial distribution, the excitation energies were obtained from solute-solvent all-valence-electron INDO/CIS calculations. The shift of the weak n-pi(*) transition is obtained as 2045+/-40 cm(-1) and the strong and broad pi-pi(*) shift as -1790+/-30 cm(-1). These results are in good agreement with the experimental values of 2200 and -1600 cm(-1), respectively. Standard procedure used by common force fields to generate atomic charges to describe the electrostatic moments of the solute, with HF6-31G(d), gives a dipole moment of 3.64 D. Using these standard charges in the simulation, the average shifts are calculated as 1395+/-35 and -1220+/-25 cm(-1), both about 600 cm(-1) smaller in magnitude than those obtained with the average converged fully polarized solute. The influence of the solute polarization in the solute-solvent interaction and, in particular, in solute-solvent hydrogen bonds is analyzed.     

How accurate is the density functional theory combined with symmetry-adapted perturbation theory approach for CH-pi and pi-pi interactions? A comparison to supermolecular calculations for the acetylene-benzene dimer

Five different orientations of the acetylene-benzene dimer including the T-shaped global minimum structure are used to assess the accuracy of the density functional theory combined with symmetry adapted perturbation theory (DFT-SAPT) approach in its density-fitting implementation (DF-DFT-SAPT) for the study of CH-pi and pi-pi interactions. The results are compared with the outcome of counterpoise corrected supermolecular calculations employing second-order M?ller-Plesset (MP2), spin-component scaled MP2 (SCS-MP2) and single and double excitation coupled cluster theory including perturbative triple excitations (CCSD(T)). For all considered orientations MP2 predicts much deeper potential energy curves with considerably shifted minima compared to CCSD(T) and DFT-SAPT. In spite of being an improvement over the results of MP2, SCS-MP2 tends to underestimate the well depth while DFT-SAPT, employing an asymptotically corrected hybrid exchange-correlation potential in conjunction with the adiabatic local density approximation for the exchange-correlation kernel, is found to be in excellent agreement with CCSD(T). Furthermore, DFT-SAPT provides a detailed understanding of the importance of the electrostatic, induction and dispersion contributions to the total interaction energy and their repulsive exchange corrections.