Purification of Phleum pratense pollen extract by immunoaffinity chromatography and high-performance ion-exchange chromatography

Basic allergens of Phleum pratense pollen extract have been purified by either sequence gel filtration-ion-exchange high-performance liquid chromatography (HPIEX) and size-exclusion HPLC or sequence gel filtration-immunoaffinity chromatography and HPIEX. The second procedure seems to be suitable for preparative purposes.     

Chemometric investigations on environmental data from Carlo Alberto irrigation canal (Alessandria,Piedmont, Italy)

The Carlo Alberto Canal connects Bormida and Tanaro rivers in Piedmont (ITALY). It was created for irrigation purposes but since its waters are suspected to be polluted, a sampling campaign was performed by the ARPA of Alessandria. The physico-chemical parameters analysed along 3 years (1998-2000) were investigated by multivariate chemometric methods. PCA showed that the waters situation depends heavily on the sampling period. Also a Kohonen self-organising map confirmed the clustering observed, providing insights into the causes of the clusterisation. New samplings are now being performed and a larger set of environmental variables is determined on each sample.     

Miniaturised pressurised liquid extraction of chloroanilines from soil with subsequent analysis by large-volume injection-gas chromatography-mass spectrometry

A number of chloroanilines were extracted from soil by means of miniaturised pressurised liquid extraction (PLE). The extraction procedure was optimised for both large-volume on-column (LV-OC) and programmed-temperature vaporisation (PTV) injections combined with GC-MS. Hexane was the only extraction solvent suited for LV-OC and hexane/acetone gave the best results when using a PTV. Overall, the hexane/acetone-plus-PTV procedure shows better results than the hexane-plus-LV-OC method in terms of analyte recovery (36-109% versus 5-87%), repeatability (8-13% versus 4-31%) and detection limits. Both approaches allow detection of the chloroanilines in complex soil samples down to the 5-50 ng/g range. However, the PTV-based procedure is superior as regards robustness: over one hundred samples can be analysed without any maintenance being required.     

Effects of an 8-bromodeoxyguanosine incorporation on the parallel quadruplex structure [d(TGGGT)]4

NMR, molecular dynamics and mechanics calculations, and CD spectroscopy were used to characterise three tetramolecular quadruplex complexes: [d(TG(Br)GGT)](4), [d(TGG(Br)GT)](4) and [d(TGGG(Br)T)](4), where G(Br) indicates an 8-bromoguanine residue. All three quadruplexes are characterised by a 4-fold symmetry with all strands parallel to each other and, differently to what has been observed for other parallel quadruplex structures, with a tetrad (formed by 8-Br-dGs) in a syn conformation. The whole of the data demonstrates that the replacement in turn of different dG residues with 8-Br-dG in the sequence 5[prime or minute]-TGGGT-3[prime or minute] affects the resulting structures in different ways, leading to different CD profiles and thermal stabilities. Particularly, [d(TG(Br)GGT)](4) and [d(TGG(Br)GT)](4) are more stable than the unmodified sequence, whereas [d(TGGG(Br)T)](4) is much less stable than the natural counterpart. The conformational features found in the three quadruplexes might, in principle, amplify the range of applicability of synthetic oligonucleotides as aptamers or catalysts, by providing novel structural motifs with different molecular recognition capabilities from those of native DNA sequences.     

Selective digestion and novel cleanup techniques for detection of benzo[a]pyrene diol epoxide-DNA adducts by capillary electrophoresis/mass spectrometry

Benzo[a]pyrene (BP) is a ubiquitous environmental polycyclic aromatic hydrocarbon (PAH) which, upon metabolic conversion to reactive benzo[a]pyrene-7,8-diol-9,10-epoxide (BPDE), has been found to attach covalently to DNA. Given the low level of DNA adducts typically present in vivo or in vitro, an essential first step prior to capillary electrophoresis/mass spectrometry (CE/MS) (or liquid chromatography/mass spectrometry (LC/MS)) analysis of the DNA digests is the removal of the bulk non-adducted nucleotides, enzymes or salts, and isolation of enriched adducts. This report focuses on the development of novel sample handling methods aimed at facilitating the analysis of BPDE-DNA adducts by CE/MS. This approach involves a simple variation on the digestion procedure, in combination with the use of metal affinity ZipTips for the more efficient cleanup of BPDE-DNA adducts formed in vitro for subsequent CE/MS analysis. The previously described digestion procedure, consisting of micrococcal nuclease, spleen phosphodiesterase and nuclease P1, allows for selective dephosphorylation of normal nucleotides, while leaving adducted nucleotides intact. Metal affinity ZipTips, typically used for selective extraction of phosphopeptides, were used here for extraction of adducted nucleotides. The utility of metal affinity SPE was tested on mixtures of dG and dGp, wherein nucleotide extracts contained no detectable nucleosides by CE/UV analysis. An in vitro BPDE-DNA incubation was then digested using the above procedure. Metal affinity solid-phase extraction (SPE) was subsequently used for the selective isolation of phosphorylated components, i.e., adducted nucleotides, from the mixture of enzymes and non-adducted nucleosides. SPE extracts were enriched in nucleotide adducts and analyzed using sample stacking and CE/MS. This method has several advantages over previously described cleanup procedures for dGp-BPDE adducts: fast, simple, uses commercially available materials, no need for excessive dilution (small scale), the suitability for use with automation, and possible applicability to other bulky hydrophobic adducts.     

Numerical and experimental analysis of periodic patterns and sedimentation of lysozyme

This paper deals with experimental investigation, mathematical modelling and numerical simulation of the crystallization processes induced by counter diffusion method of a precipitant agent in a lysozyme protein solution. Novel mathematical strategies are introduced to simulate the experiments and in particular to take into account the kinetics of the growth process and the motion of the crystals due to the combined effect of gravitational force and viscous drag if the sedimenting process is allowed (protein chamber free of gel). Comparison between experimental observations and numerical simulations in the presence of convection and sedimentation and without them provides a validation of the model. The crystal formation in gel results modulated in space. If the gel matrix is not present, convective cells arise in the protein chamber due to local inversions in the density distribution associated to nucleation phenomena. As time passes, these vortex cells migrate towards the top of the protein chamber exhibiting a different wave number according to the distance from the gel interface. The sedimentating particles produce a wake due to depletion of protein from the surrounding liquid. The models and the experiments may represent a useful methodology for the determination of the parameters and conditions that may lead to protein crystallization.     

Solvent induced structural transitions in a liquid crystalline polyester

Quenched nematic films of a liquid crystalline polyester were crystallized either thermally or by solvent induced crystallization, and their structural organization was analyzed. All techniques show that the thermal crystallization transforms part of the nematic phase into a crystalline one, the remaining part leaving unchanged. By contrast, the solvent induced crystallization does transform a part of the nematic phase into a crystalline phase, leaving the residual part in a much more disordered state resembling the amorphous state.     

Recognition of the syndiotactic polypropylene polymorphs via dynamic-mechanical analysis

Three syndiotactic polypropylene samples were crystallized under different conditions in order to obtain different polymorphs. A first sample was crystallized at high temperature, obtaining the helical form I; a second was crystallized from the melt at 0°C for many days obtaining the trans-planar mesophase; a third sample was obtained by solvent induced crystallization followed by annaeling of the trans-planar mesophase, leading to a mixture of both the helical forms I and II. In the dynamic-mechanical analysis the helical form I showed only one peak of tan δ corresponding to the amorphous glass transition. The other polymorphs also showed this transition centered at about the same temperature. Beside the peak corresponding to the Tg, the trans-planar mesophase was characterized by a peak appearing at 70°C, and the helical form II by a peak at 100°C. These peaks, unambiguously associated to transitions of the different forms, can be considered a distinctive evidence for the polymorphs obtained in different processing conditions.     

Physical and Chemical Characterization of Cellulose Based Textiles Modified by Periodate Oxidation

Conversion of dihydroxyl groups to dialdehyde by periodate oxidation is a useful method widely used in derivatization of cellulose to activate the polymer to further reactions as grafting polymerization. To investigate the cellulose behavior at different level of oxidation and to better understand the influence of the crystallinity on the effects induced by oxidative reactions on different cellulose materials, linen and cotton textiles have been oxidized with periodate solutions in different conditions. Oxidized cellulose samples have been characterized by several techniques: solid-state ¹³C NMR, Wide Angle X-Ray diffraction, and SEM. Moreover the mechanical properties of the untreated and oxidized yarns have been evaluated by means of tensile tests, the oxidation degree has been measured by means of the hydroxylamine hydrochloride method.     

Source apportionment of gaseous atmospheric pollutants by means of an absolute principal component scores (APCS) receptor model

A multivariate statistical method has been applied to apportion the atmospheric pollutant concentrations measured by automatic gas analyzers placed on a mobile laboratory for air quality monitoring in Taranto (Italy). In particular, Principal Component Analysis (PCA) followed by Absolute Principal Component Scores (APCS) technique was performed to identify the number of emission sources and their contribution to measured concentrations of CO, NOx, benzene toluene m+p-Xylene (BTX). This procedure singled out two different sources that explain about 85% of collected data variance.