Vinyl Glycosides in Oligosaccharide Synthesis. 2. The Use of Allyl and Vinyl Glycosides in Oligosaccharide Synthesis

A novel latent-active glycosylation strategy has been described that relies on the isomerization of substituted allyl glycosides to give the corresponding vinyl glycosides, which can subsequently be used in Lewis acid-mediated glycosylations. The isomerization reaction was performed by a rhodium catalyst obtained by treating tris(triphenylphosphine)rhodium(I) chloride with n-butyllithium. This catalyst has many advantageous properties over the use of conventional Wilkinson's catalyst. The glycosylation reactions gave high yields for both primary and secondary sugar alcohols, and the anomeric selectivity could be controlled by the constitution of the glycosyl donor and reaction conditions. The new isomerization and glycosylation approach enables complex oligosaccharides of biological importance to be prepared in a highly convergent manner.     

Negative Electron Transfer Dissociation Sequencing of 3-<Emphasis Type="Italic">O</Emphasis>-Sulfation-Containing Heparan Sulfate Oligosaccharides

Among dissociation methods, negative electron transfer dissociation (NETD) has been proven the most useful for glycosaminoglycan (GAG) sequencing because it produces informative fragmentation, a low degree of sulfate losses, high sensitivity, and translatability to multiple instrument types. The challenge, however, is to distinguish positional sulfation. In particular, NETD has been reported to fail to differentiate 4-O- versus 6-O-sulfation in chondroitin sulfate decasaccharide. This raised the concern of whether NETD is able to differentiate the rare 3-O-sulfation from predominant 6-O-sulfation in heparan sulfate (HS) oligosaccharides. Here, we report that NETD generates highly informative spectra that differentiate sites of O-sulfation on glucosamine residues, enabling structural characterizations of synthetic HS isomers containing 3-O-sulfation. Further, lyase-resistant 3-O-sulfated tetrasaccharides from natural sources were successfully sequenced. Notably, for all of the oligosaccharides in this study, the successful sequencing is based on NETD tandem mass spectra of commonly observed deprotonated precursor ions without derivatization or metal cation adduction, simplifying the experimental workflow and data interpretation. These results demonstrate the potential of NETD as a sensitive analytical tool for detailed, high-throughput structural analysis of highly sulfated GAGs.

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Graphical Abstract

     

Photodissociation of the water dimer: three-dimensional quantum dynamics studies on diabatic potential-energy surfaces

The results are presented of three-dimensional model studies of the photodissociation of the water dimer following excitation in the first absorption band. Diabatic potential-energy surfaces are used to investigate the photodissociation following excitation of the hydrogen bond donor molecule and of the hydrogen bond acceptor molecule. In both cases, the degrees of freedom considered are the two OH-stretch modes of the molecule being excited, and the dimer stretch vibration. The diabatic potentials are based on adiabatic potential surfaces computed with the multireference configuration-interaction method, and the dynamics of dissociation was studied using the time-dependent wave-packet method. The dynamics calculations yield a donor spectrum extending over roughly the same range of frequencies as the spectrum of the water monomer computed at the same level of theory. The acceptor spectrum has the same width as the monomer spectrum, but is shifted to the blue by 0.4-0.5 eV. The dimer spectrum obtained by averaging the donor and the acceptor spectrum is broader than the monomer spectrum, with the center of the dimer first absorption band shifted to the blue by about 0.2 eV relative to the monomer band. Our reduced dimensionality calculations do not find the red tail predicted for the dimer first absorption band by Harvey et al. [J. Chem. Phys. 109, 8747 (1998)]. This conclusion also holds if preexcitation of the dimer stretch vibration with one or two quanta is considered.     

Protons colliding with crystalline ice: proton reflection and collision induced water desorption at low incidence energies

We present results of classical trajectory (CT) calculations on the sticking of protons to the basal plane (0001) face of crystalline ice, for normal incidence at a surface temperature (Ts) of 80 K. The calculations were performed for moderately low incidence energies (Ei) ranging from 0.05 to 4.0 eV. Surprisingly, significant reflection is predicted at low values of Ei (< or = 0.2 eV) due to repulsive electrostatic interactions between the incident proton and the surface water molecules with one of their H-atoms pointing upward toward the gas phase. The sticking probability increases with Ei and converges to unity for Ei > or = 0.8 eV. In the case of sticking, the proton is trapped in the ice forming a Zundel complex (H5O2+), with an average binding energy of 9.9 eV with a standard deviation of 0.5 eV, independent of the value of Ei. In nearly all sticking trajectories, the proton is implanted into the ice surface, with a penetration depth that increases with Ei. The strong interaction with the neighboring water molecules leads to a local rupture of the hydrogen bonding network, resulting in collision induced desorption of water (puffing), a process that occurs with significant probability even at the lowest Ei considered. The probability of water desorption increases with Ei. In nearly all trajectories in which water desorption occurs, a single three-coordinated water molecule is desorbed from the topmost monolayer.     

A binaphtolate titanium complex featuring a linear tetradentate [OSSO]-bis(phenolato) ligand: Synthesis and partial hydrolysis to a homochiral dinuclear complex

Reaction of [{(R)-C₂₀H₁₂O₂}Ti(OⁱPr)₂] with 1,4-dithiaalkanediyl-2,2′-bis(6-tert-butyl-4-methyl-phenol) affords the chiral-at-metal complex [{(R)-C₂₀H₁₂O₂}Ti{(C₆H₂O-^tBu-6-Me-4)₂S(CH₂)₂S}] (1) in low diastereomeric excess. Complex 1 can be partially hydrolyzed to give a dinuclear species [μ-{(R)-C₂₀H₁₂O₂}-μ-O-{(Λ)-Ti[(C₆H₂O-^tBu-6-Me-4)₂S(CH₂)₂S]}₂] (2), in which the two titanium centers are homochiral. The molecular structure of 1 and 2 was confirmed by single crystal X-ray analysis, which shows C₂-symmetry in both complexes.     

A note on maximal covering location games

In this note we introduce and analyze maximal covering location games. As the core may be empty, several sufficient conditions for core non-emptiness are presented. For each condition we provide an example showing that when the condition is not satisfied, core non-emptiness is not guaranteed.     

Six-dimensional quantum dynamics of dissociative chemisorption of H2 on Ru(0001)

Six-dimensional quantum dynamics calculations on dissociative chemisorption of H(2) on Ru(0001) are performed. The six-dimensional potential energy surface is generated using density functional theory. Two different generalized gradient approximations are used, i.e., RPBE and PW91, to allow the results to be compared. The dissociation probability for normally incident H(2) on a clean Ru(0001) surface is calculated. Large differences between the reaction probabilities calculated using the RPBE and PW91 are seen, with the PW91 results showing a much narrower reaction probability curve and a much higher reactivity. Using the reaction probabilities and assuming normal energy scaling reaction rates are generated for temperatures between 300 and 800 K. The rate generated using the PW91 results is higher by about a factor 5 than the rate based on the RPBE results in the range of temperatures relevant to ammonia production.     

Dispiroketals in synthesis (Part 5): A new opportunity for oligosaccharide synthesis using differentially activated glycosyl donors and acceptors

The reactivity of dispiroketal protected thioglycosides makes them useful new precursors for oligossaccharide synthesis as is illustrated by the preparation of a protected pentasaccharide unit common to the variant surface glycoprotein of Trypanosoma brucei.     

Preparation of Well‐Defined Antibody–Drug Conjugates through Glycan Remodeling and Strain‐Promoted Azide–Alkyne Cycloadditions

Antibody–drug conjugates hold considerable promise as anticancer agents, however, producing them remains a challenge and there is a need for mild, broadly applicable, site‐specific conjugation methods that yield homogenous products. It was envisaged that enzymatic remodeling of the oligosaccharides of an antibody would enable the introduction of reactive groups that can be exploited for the site‐specific attachment of cytotoxic drugs. This is based on the observation that glycosyltransferases often tolerate chemical modifications in their sugar nucleotide substrates, thus allowing the installation of reactive functionalities. An azide was incorporated because this functional group is virtually absent in biological systems and can be reacted by strain‐promoted alkyne–azide cycloaddition. This method, which does not require genetic engineering, was used to produce an anti‐CD22 antibody modified with doxorubicin to selectively target and kill lymphoma cells.