Intramolecular [2+2+2] cycloaddition reactions of yne-ene-yne and yne-yne-ene enediynes catalysed by Rh(I): experimental and theoretical mechanistic studies

N-tosyl-linked open-chain yne-ene-yne enediynes 1 and 2 and yne-yne-ene enediynes 3 and 4 have been satisfactorily synthesised. The [2+2+2] cycloaddition process catalysed by the Wilkinson catalyst [RhCl(PPh(3))(3)] was tested with the above-mentioned substrates resulting in the production of high yields of the cycloadducts. Enediynes 1 and 2 gave standard [2+2+2] cycloaddition reactions whereas enediynes 3 and 4 suffered β-hydride elimination followed by reductive elimination of the Wilkinson catalyst to give cycloadducts, which are isomers of those that would be obtained by standard [2+2+2] cycloaddition reactions. The different reactivities of these two types of enediyne have been rationalised by density functional theory calculations.     

Synthesis, characterisation and in vitro anti-angiogenic potential of dendron VEGF blockers

To overcome the lack of in vivo stability of certain peptides used in cancer treatment and to increase their retention time in the extracellular matrix of the target tissue, the anti-angiogenic WHLPFKC sequence is synthesised at the uppermost branching generation of a poly(ε-lysine) dendron. The root of these dendrons is designed to interact preferentially with macromolecules of the extracellular matrix, whilst the uppermost branching generation of the dendron increased the exposed density of the bioactive peptide. Bioactivity testing of the blockers is performed on HUVECs. The results show that the dendron tethered with VEGF blockers was still able to inhibit proliferation and angiogenesis. Their relatively larger structure did not prevent the interaction with VEGF.     

Monomeric fullerenes in lipid membranes: effects of molecular shape and polarity

We report a combined theoretical and experimental study on the single-molecule interaction of fullerenes with phospholipid membranes. We studied pristine C(60) (1) and two N-substituted fulleropyrrolidines (2 and 3), one of which (3) bore a paramagnetic nitroxide group. Theoretical predictions of fullerene distribution and permeability across lipid bilayers were combined with electron paramagnetic resonance (EPR) experiments in aligned DMPC/DHPC bicelles containing the paramagnetic fulleropyrrolidine 3 or either one of the diamagnetic fullerenes together with spin-labeled lipids. We found that, at low concentrations, fullerenes are present in the bilayer as single molecules. Their preferred location in the membrane is only slightly influenced by the derivatization: all derivatives were confined just below the hydrophilic/hydrophobic interface, because of the key role played by dispersion interactions between the highly polarizable fullerene cage and the hydrocarbon chains, which are especially tight within this region. However, the deviation from spherical shape is sufficient to induce a preferential orientation of 2 and 3 in the membrane. We predict that monomeric fullerenes spontaneously penetrate the bilayer, in agreement with the results of molecular dynamics simulations, but we point out the limits of the currently used permeability model when applied to hydrophobic solutes.     

Genomics of selected human odorant receptors

Single nucleotide polymorphisms (SNPs) in odorant receptor genes may influence the protein sequence and consequently also the function of the receptors. An analysis of the HapMap data for human OR3A1 was performed and provided evidence that genetic differences subject to ancestry and gender can be recognized. A genomic comparison of individuals shows the diversity of odorant receptor genes and therefore potentially the variety of the sense of smell. At this time, two complete human genomes are available in public domain, which we used for this purpose. Correspondence: Anton Beyer, Institute of Theoretical Chemistry, University of Vienna, A-1090 Vienna, Austria.     

Oxidation of phenothiazine dyes by manganese(III) in sulfuric acid solution

Manganese(III) sulfato complexes cause the oxidative degradation of methylene blue and its partially and fully N-demethylated derivatives, azure B and thionine dyes, respectively, in sulfuric acid media. The reaction proceeds through a colored reactive organic radical generated in the first stage via one-electron oxidation of the starting material, leading to a mixture of N-demethylated and/or deaminated species. The rates of formation of the methylene blue and azure B radicals are much higher than those of their further decomposition, whereas the generation of the thionine radical is much slower than its immeasurably fast decay. The kinetics of decomposition of all three dyes and the methylene blue and azure B radicals were studied spectrophotometrically under isolation conditions at 298 K. The first stage of each reaction proceeds according to a second-order rate expression, being first order in the dyes and in the manganese(III) concentrations. Dependence of the pseudo-first-order rate constants on the oxidant concentration for the second stage exhibits a saturation effect under the applied conditions. It is postulated that electron transfer takes place between the [Mn(SO₄)₃]³⁻ complex and the protonated form of the dye. The reactivity order of the dyes as determined from the second-order rate constants for the first reaction stage corresponds to the order of their HOMO energies.     

A polymer inclusion membrane based on the ionic liquid trihexyl(tetradecyl)phosphonium chloride and PVC for solid–liquid extraction of Zn(II) from hydrochloric acid solution

Abstract  

Extraction of Zn(II) from aqueous solution using polymer inclusion membranes based on poly(vinyl chloride) containing the phosphonium-based ionic liquid trihexyl(tetradecyl)phosphonium chloride (Cyphos^? IL 101) is described. Zn(II) could efficiently be extracted from 5 M hydrochloric acid solution with membranes containing 30 wt% Cyphos IL 101, whereas back-extraction was successfully achieved with 1 M sulfuric acid. Prepared membranes were evaluated in terms of stability in air as well as in terms of leaching of the ionic liquid from the membranes in aqueous solution.     

Complexation of [2.2]paracyclophane with β- and γ-cyclodextrins studied by HPLC and NMR

The NMR spectra of [2.2]paracyclophane with β- or γ-cyclodextrin in DMF-d₇ at room temperature do not show significant complexation, while HPLC of the complexes in mixed H₂O:alcohol solvents demonstrate complexation with different stoichiometries. At 243 K in DMF solution the H3 and H5 NMR signals of γ-cyclodextrin (but not β) exhibit complexation-induced chemical shifts denoting complex formation. According to HPLC, at room temperature the [2.2]paracyclophane complex with β-cyclodextrin in 20% H₂O:EtOH exhibits 1:2 stoichiometry with K ₁ = 1×10² ± 2, K ₂ = 9.0×10⁴ ± 2×10³ (K = 9×10⁶) while that with γ-cyclodextrin in 50% H₂O:MeOH exhibits 1:1 stoichiometry with K ₁ = 4×10³ ± 150 M⁻¹. Thermodynamic parameters for both complexes have been estimated from the retention time temperature dependence. For the β-cyclodextrin complexation at 25°C ΔG ⁰ _CD is −39.7 kJ mol⁻¹ while ΔH ⁰ _CD and ΔS ⁰ _CD are −88.2 kJ mol⁻¹ and −0.16 kJ mol⁻¹ K⁻¹. For γ-cyclodextrin, the corresponding values are ΔG ⁰ _CD = −20.5 kJ mol⁻¹, ΔH ⁰ _CD = −33.5 kJ mol⁻¹ and ΔS ⁰ _CD = −0.04 kJ mol⁻¹ K⁻¹.      

Electronegativity and resonance parameters from the geometry of monosubstituted benzene rings

Reference values of the structural substituent parameters, S _E and S _R, measuring the electronegativity and resonance effects, respectively, of functional groups (Campanelli et al. J Phys Chem A 107:6429–6440, 2003) have been determined from the benzene ring geometries of 100 Ph–X species, including different conformations of the same molecule. Geometries have been obtained by quantum chemical calculations at the HF/6-31G*, HF/6-311++G**, and B3LYP/6-311++G** levels of theory. The substituent parameters from HF/6-311++G** calculations are in close agreement with those determined at the HF/6-31G* level. Using the B3LYP density functional yields S _E and S _R values which—in general—correlate well with the corresponding HF values. Exceptions occur with some charged groups, and, in the case of S _E, with a few dipolar groups having very high or low electronegativities. S _R values from B3LYP calculations are about 22% smaller than the corresponding HF values. The variations of the benzene ring geometry caused by electronegativity, resonance, and steric effects are illustrated in some detail.     

Baltimore PM2.5 Supersite: highly time-resolved organic compounds—sampling duration and phase distribution—implications for health effects studies

As part of the Baltimore PM2.5 Supersite study, intensive three-hourly continuous PM2.5 sampling was conducted for nearly 4 weeks in summer of 2002 and as well in winter of 2002/2003. Close to 120 individual organic compounds have been quantified separately in filter and polyurethane foam (PUF) plug pairs for 17 days for each sampling period. Here, the focus is on (1) describing briefly the new sampling system, (2) discussing filter/PUF plugs breakthrough experiments for semi-volatile compounds, (3) providing insight into phase distribution of semi-volatile organic species, and (4) discussing the impact of air pollution sampling time on human exposure with information on maximum 3- and 24-h averaged ambient concentrations of potentially adverse health effects causing organic pollutants. The newly developed sampling system consisted of five electronically controlled parallel sampling channels that are operated in a sequential mode. Semi-volatile breakthrough experiments were conducted in three separate experiments over 3, 4, and 5 h each using one filter and three PUF plugs. Valuable insight was obtained about the transfer of semi-volatile organic compounds through the sequence of PUF plugs and a cut-off could be defined for complete sampling of semi-volatile compounds on only one filter/PUF plug pair, i.e., the setup finally used during the seasonal PM2.5 sampling campaign. Accordingly, n-nonadecane (C19) with a vapor pressure (vp) of 3.25 × 10⁻⁴ Torr is collected with > 95% on the filter/PUF pair. Applied to phenanthrene, the most abundant the PAH sampled, phenanthrene (vp, 6.2 × 10⁻⁵ Torr) was collected completely in wintertime and correlates very well with three-hourly PM2.5 ambient concentrations. Valuable data on the fractional partitioning for semi-volatile organics as a function of season is provided here and can be used to differentiate the human uptake of an organic pollutant of interest via gas- and particle-phase exposure. Health effects studies often relay on PM2.5 exposure measurements taken over 24 h or longer. We found that maximum 3-h concentrations are frequently two to five times higher than that found for maximum 24-h concentrations, an important aspect when considering that short-term exposure to higher air pollution levels are more likely to overpower defense mechanisms in the human lung with subsequent adverse effects even at lower pollutant levels.     

Extending the applicability of pressurized hot water extraction to compounds exhibiting limited water solubility by pH control: curcumin from the turmeric rhizome

Pressurized hot water extraction (PHWE, also known as subcritical water extraction) is commonly considered to be an environmentally friendly extraction technique that could potentially replace traditional methods that use organic solvents. Unfortunately, the applicability of this technique is often limited by the very low water solubility of the target compounds, even at high temperatures. In this paper, the scope for broadening the applicability of PHWE by adjusting the pH of the water used in the extraction is demonstrated in the extraction of curcumin (which exhibits very limited water solubility) from untreated turmeric (Curcuma longa L.) rhizomes. Although poor extraction yields were obtained, even at high temperatures when using degassed water or neutral phosphate buffer as the extraction medium, yields exceeding those obtained by Soxhlet extraction were achieved using highly acidic pH buffers due to curcumin protonation. The influence of the temperature, pH, and buffer concentration on the extraction yield were investigated in detail by means of a series of designed experiments. Optimized conditions for the extraction of curcumin from turmeric by PHWE were estimated at 197 °C using 62 g/L buffer concentration at pH 1.6. The relationships between these variables were subjected to statistical analysis using response surface methodology.