Conformational changes in a photosensory LOV domain monitored by time-resolved NMR spectroscopy

Phototropins are light-activated kinases from plants that utilize light-oxygen-voltage (LOV) domains as blue light photosensors. Illumination of these domains leads to the formation of a covalent linkage between the protein and an internally bound flavin chromophore, destabilizing the surrounding protein and displacing an alpha-helix from its surface. Here we use a combination of spectroscopic tools to monitor the kinetic processes that spontaneously occur in the dark as the protein returns to the noncovalent ground state. Using time-resolved two-dimensional (2D) NMR methods, we measured the rate of this process at over 100 independent sites throughout the protein, establishing that regeneration of the dark state occurs cooperatively within a 1.6-fold range of observed rates. These data agree with other spectroscopic measurements of the kinetics of protein/FMN bond cleavage and global conformational changes, consistent with these processes experiencing a common rate-limiting step. Arrhenius analyses of the temperature dependence of these rates suggest that the transition state visited during this regeneration has higher energy than the denatured form of this protein domain despite the fact that there is no global unfolding of the domain during this process.     

Determination of chromium(III) and total chromium in marine waters

The development of an analytical technique is described which may be used to determine chromium, chromium(III) and chromium(VI) in estuarine and coastal waters. The method is based on selective micro-solvent extraction with subsequent GFAAS. The technique has been applied in a major North Sea estuary. The results obtained confirm that thermodynamic factors alone cannot be relied upon to describe the form of chromium in estuaries. Kinetic factors appear to have a strong influence over speciation and lead to the persistence of Cr(III) species in environments where Cr(VI) would be expected to be present.     

The discovery of novel auxin transport inhibitors by molecular modeling and three-dimensional pattern analysis

Summary Molecular modeling techniques and three-dimensional (3D) pattern analysis have been used to investigate the chemical and steric properties of compounds that inhibit transport of the plant hormone auxin. These compounds bind to a specific site on the plant plasma membrane characterized by its affinity for the herbicide N-1-naphthylphthalamic acid (NPA). A 3D model was derived from critical features of a set of ligands for the NPA receptor, a suggested binding conformation is proposed, and implications for the topographical features of the NPA receptor are discussed. This model, along with 3D structural analysis techniques, was then used to search the Abbott corporate database of chemical structures. Of the 467 compounds that satisfied the criteria of the model, 77 representative molecules were evaluated for their ability to compete for the binding of [³H]NPA to corn microsomal membranes. Nineteen showed activity that ranged from 16 to 85% of the maximum NPA binding. Four of the most active of these, representing chemical classes not included in the original compound set, were also found to inhibit polar auxin transport through corn coleoptile sections. Thus, this study demonstrates that 3D analysis techniques can identify active, novel ligands for biochemical target sites with concomitant physiological activity.     

Control samples for the determination of pH in low ionic strength waters: consensus values from interlaboratory tests

The results of a series of interlaboratory tests using low ionic strength buffer solutions are reported. The test data and other background information are presented as the basis for more realistic quality control materials for pH determination in low ionic strength waters. The effect of atmospheric carbon dioxide on the pH of low ionic strength reference samples is discussed. Several control samples are recommended for routine use.     

The ′T Hooft-Polyakov monopole near the Prasad-Sommerfield limit

A perturbative classical monopole solution for the SO(3) gauge theory is constructed in the limit of small but non-vanishing Higgs potential. This corresponds to the limit $\text{μ}{}^2\text{2M}{}_{\mathrm{W}}{}^2\text{=}\text{λ}\text{? 1}$, where μ equals the mass of the scalar particle and M_W equals the mass of the intermediate vector particles. The monopole solution and mass are found to involve non-analytic functions of λ: $\text{γ}$ and λ ln λ. The monopole mass M_m is calculated to order $\text{μ}{}^2\text{M}{}_{\mathrm{W}}$ as

$\text{M}{}_{\mathrm{m}}\text{=}\text{4π}\text{e}{}^2\text{M}{}_{\mathrm{w}}\text{1+}\text{1}\text{2}\text{μ}\text{M}{}_{\mathrm{w}}\text{+}\text{1}\text{2}\text{μ}{}^2\text{M}{}^2{}_{\mathrm{w}}\text{ln}\text{μ}\text{M}{}_{\mathrm{w}}\text{+0.7071}\text{μ}{}^2\text{M}{}^2{}_{\mathrm{w}}$

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Synthesis and application of a new bisphosphite ligand collection for asymmetric hydroformylation of allyl cyanide

A series of mono- and bidentate phosphites was prepared with (S)-5,5',6,6'-tetramethyl-3,3'-di-tert-butyl-1,1'-biphenyl-2,2'-dioxy [(S)-BIPHEN] as a chiral auxiliary and screened in the asymmetric hydroformylation of allyl cyanide. These hydroformylation results were compared with those of two existing chiral ligands, Chiraphite and BINAPHOS, whose utility in asymmetric hydroformylation has been previously demonstrated. Bisphosphite 11 with a 2,2'-biphenol bridge was found to be the best overall ligand for asymmetric hydroformylation of allyl cyanide with up to 80% ee and regioselectivities (branch-to-linear ratio, b/l) of 20 with turnover frequency of 625 [h(-)(1)] at 35 degrees C. BINAPHOS gave enantioselectivities up to 77% ee when the reaction was conducted in either acetone or neat but with poor regioselectivity (b/l 2.8) and activities 7 times lower than that of 11. The product of allyl cyanide hydroformylation using (R,R)-11 was subsequently transformed into (R)-2-methyl-4-aminobutanol, a useful chiral building block. Single-crystal X-ray structures of (S,S)-11 and its rhodium complex 19 were determined.