Pyrene-neomycin conjugate: dual recognition of a DNA triple helix

We report the synthesis of pyrene-neomycin conjugate and its ability to stabilize DNA/RNA triple helices.     

Neomycin-neomycin dimer: an all-carbohydrate scaffold with high affinity for AT-rich DNA duplexes

A dimeric neomycin-neomycin conjugate 3 with a flexible linker, 2,2'-(ethylenedioxy)bis(ethylamine), has been synthesized and characterized. Dimer 3 can selectively bind to AT-rich DNA duplexes with high affinity. Biophysical studies have been performed between 3 and different nucleic acids with varying base composition and conformation by using ITC (isothermal calorimetry), CD (circular dichroism), FID (fluorescent intercalator displacement), and UV (ultraviolet) thermal denaturation experiments. A few conclusions can be drawn from this study: (1) FID assay with 3 and polynucleotides demonstrates the preference of 3 toward AT-rich sequences over GC-rich sequences. (2) FID assay and UV thermal denaturation experiments show that 3 has a higher affinity for the poly(dA)·poly(dT) DNA duplex than for the poly(dA)·2poly(dT) DNA triplex. Contrary to neomycin, 3 destabilizes poly(dA)·2poly(dT) triplex but stabilizes poly(dA)·poly(dT) duplex, suggesting the major groove as the binding site. (3) UV thermal denaturation studies and ITC experiments show that 3 stabilizes continuous AT-tract DNA better than DNA duplexes with alternating AT bases. (4) CD and FID titration studies show a DNA binding site size of 10-12 base pairs/drug, depending upon the structure/sequence of the duplex for AT-rich DNA duplexes. (5) FID and ITC titration between 3 and an intramolecular DNA duplex [d(5'-A(12)-x-T(12)-3'), x = hexaethylene glycol linker] results in a binding stoichiometry of 1:1 with a binding constant ～10(8) M(-1) at 100 mM KCl. (6) FID assay using 3 and 512 hairpin DNA sequences that vary in their AT base content and placement also show a higher binding selectivity of 3 toward continuous AT-rich than toward DNA duplexes with alternate AT base pairs. (7) Salt-dependent studies indicate the formation of three ion pairs during binding of the DNA duplex d[5'-A(12)-x-T(12)-3'] and 3. (8) ITC-derived binding constants between 3 and DNA duplexes have the following order: AT continuous, d[5'-G(3)A(5)T(5)C(3)-3'] > AT alternate, d[5'-G(3)(AT)(5)C(3)-3'] > GC-rich d[5'-A(3)G(5)C(5)T(3)-3']. (9) 3 binds to the AT-tract-containing DNA duplex (B* DNA, d[5'-G(3)A(5)T(5)C(3)-3']) with 1 order of magnitude higher affinity than to a DNA duplex with alternating AT base pairs (B DNA, d[5'-G(3)(AT)(5)C(3)-3']) and with almost 3 orders of magnitude higher affinity than a GC-rich DNA (A-form, d[5'-A(3)G(5)C(5)T(3)-3']).     

Breaking the barrier: an osmium photosensitizer with unprecedented hypoxic phototoxicity for real world photodynamic therapy

Hypoxia presents a two-fold challenge in the treatment of cancer, as low oxygen conditions induce biological changes that make malignant tissues simultaneously more aggressive and less susceptible to standard chemotherapy. This paper reports the first metal-based photosensitizer that approaches the ideal properties for a phototherapy agent. The Os(phen)₂-based scaffold was combined with a series of IP-nT ligands, where phen = 1,10-phenanthroline and IP-nT = imidazo[4,5-f][1,10]phenanthroline tethered to n = 0–4 thiophene rings. Os-4T (n = 4) emerged as the most promising complex in the series, with picomolar activity and a phototherapeutic index (PI) exceeding 10⁶ in normoxia. The photosensitizer exhibited an unprecedented PI > 90 (EC₅₀ = 0.651 μM) in hypoxia (1% O₂) with visible and green light, and a PI > 70 with red light. Os-4T was also active with 733 nm near-infrared light (EC₅₀ = 0.803 μM, PI = 77) under normoxia. Both computation and spectroscopic studies confirmed a switch in the nature of the lowest-lying triplet excited state from triplet metal-to-ligand charge transfer (³MLCT) to intraligand charge transfer (³ILCT) at n = 3, with a lower energy and longer lifetime for n = 4. All compounds in the series were relatively nontoxic in the dark but became increasingly phototoxic with additional thiophenes. These normoxic and hypoxic activities are the largest reported to date, demonstrating the utility of osmium for phototherapy applications. Moreover, Os-4T had a maximum tolerated dose (MTD) in mice that was >200 mg kg^–1, which positions this photosensitizer as an excellent candidate for in vivo applications.     

Efficient and Simple Approaches Towards Direct Oxidative Esterification of Alcohols

The present article describes novel oxidative protocols for direct esterification of alcohols. The protocols involve successful demonstrations of both “cross” and “self” esterification of a wide variety of alcohols. The cross‐esterification proceeds under a simple transition‐metal‐free condition, containing catalytic amounts of TEMPO (2,2,6,6‐tetramethyl‐1‐piperidinyloxy)/TBAB (tetra‐n‐butylammonium bromide) in combination with oxone (potassium peroxo monosulfate) as the oxidant, whereas the self‐esterification is achieved through simple induction of Fe(OAc)₂/dipic (dipic=2,6‐pyridinedicarboxylic acid) as the active catalyst under an identical oxidizing environment.     

Two-color photoionization spectroscopy of uranium in a U–Ne hollow cathode discharge tube

A U–Ne hollow cathode discharge tube is used as a source of uranium atomic vapors as well as a photoelectron/photoion detector for carrying out two-color three-photon photoionization spectroscopy of uranium. Using the uranium excitation transition 0 cm⁻¹ (⁵L ₆ ⁰ ) → 16 900.38 cm⁻¹ (⁷M₇) at 591.5-nm laser wavelength as a first step transition and scanning the wavelength of a second laser from 558 to 568 nm, high-lying odd-parity atomic levels of uranium are studied in the energy region 34 500–34 813 cm⁻¹. All the expected 21 odd-parity atomic levels identified by various researchers in this region are observed in a single spectrum, demonstrating the high sensitivity achieved therein. In addition to this, we have identified eight autoionization resonances of uranium starting from its odd-parity atomic level at 33 801.06 cm⁻¹ pumped by two-photon excitation. Four out of these eight autoionization resonances are observed for the first time.     

Studies in sesquiterpenes—LVII: Isolongifolene (part 8): solvolysis of 8-bromoneoisolongifolene

Acetolysis of 8-bromoneoisolongifolene generates, besides two normal products (of elimination and S_N2 displacement), which were minor, one rearranged elimination product and a tertiary acetate. The rearranged diolefine arises from acetic acid-catalysed rearrangement of the normal elimination product, while the tertiary acetate is a Wagner substitution product arising from a syn-migration. In this context various factors controlling such migrations are discussed and, the possible role of energetics of the incipient carbonium ion at the migration origin highlighted.