Fractional Brownian dynamics in proteins

Correlation functions describing relaxation processes in proteins and other complex molecular systems are known to exhibit a nonexponential decay. The simulation study presented here shows that fractional Brownian dynamics is a good model for the internal dynamics of a lysozyme molecule in solution. We show that both the dynamic structure factor and the associated memory function fit well the corresponding analytical functions calculated from the model. The numerical analysis is based on autoregressive modeling of time series.     

Powering the analytical glow discharge

The glow discharge may be powered by direct current (dc), radio frequency (rf) and pulsed discharge sources. Each has specific advantages and special features that should be considered by analysts using the various forms of glow discharge spectroscopy. This paper reviews some of the factors that contribute to the selection of a power source for the glow discharge.     

DAMAGE TO URACIL- AND ADENINE-CONTAINING BASES, NUCLEOSIDES, NUCLEOTIDES AND POLYNUCLEOTIDES: QUANTUM YIELDS ON IRRADIATION AT 193 AND 254 NM

Abstract Photoreactions, such as base release and decomposition of the base moiety, induced by either 20 ns laser pulses at 193 nm or continuous 254 nm irradiation, were studied for a series of uracil and adenine derivatives in neutral aqueous solution. The quantum yield of chromophore loss (φ) depends significantly on the nature of the nucleic acid constituent and the saturating gas (Ar, N₂O or O₂). In the case of polynucleotides the destruction of nucleotides was measured by high-performance liquid chromatography after hydrolysis; the quantum yields (φ) are comparable to those of chromophore loss or larger. The φ_cl and aφ_dn of 0.04–0.1 for poly(U) and poly(dU), obtained for both wavelengths of irradiation, are due to processes originating from the lowest excited singlet state, i.e. formation of photohydrates and photodimers, and a second part from photoionization using λ_irr= 193 nm. Irradiation at 193 nm effectively splits pyrimidine dimers and thus reverts them into monomers. The quantum yield for release of undamaged bases (φ_br) from nucleosides, nucleotides and polynucleotides upon irradiation at 254 nm is typically φ_br= (0.1–1) × 10^?4 Breakage of the N-glycosidic bond is significantly more efficient for λ_irr=193 nm, e.g. φ_br= 1.1 × 10^?3, 0.8 × 10^?3, 4.3 × 10^?3 and 0.5 × 10^?3 for poly(A), poly(dA), poly(U) and poly(dU) in Ar-saturated solution, respectively. Enhanced φ values for λ_irr= 193 nm, essentially for adenine and its derivatives, are caused by photo-processes that are initiated by photoionization.     

Na*(3p)-Formation under grazing scattering of Na+-ions at an Al(111) surface

Excited Na*(3p)-atoms are observed in grazing surface-collision experiments with Na⁺-beams. Such atoms can be formed beyond a certain threshold velocity via resonant electron transfer between atomic and metallic conduction band levels due to motion of the atom relative to the surface of the metal (“kinematic resonance”). This mechanism is studied here theoretically employing two different techniques: the nonperturbative “Coupled Angular Mode” (CAM) method and the approximate “Transfer Hamiltonian” (TH) method. The calculated Na*(3p)-populations agree well with recent experimental results. Moreover, the complete density matrix of the Na*(3p)-subspace has been computed with the TH-method for ion-energies between 10 and 300 keV.     

Sorption preconcentration in combined methods for the determination of noble metals

Combined methods for the determination of noble metals with the use of sorption preconcentration with complexing, anion-exchange, and other sorbents are reviewed. Characteristics of sorbents, techniques of sorption preconcentration, and techniques for the preparation of a concentrate for determination are considered. Features of instrumental methods for the determination of noble metals in the analysis of different materials are discussed. Examples of the use of sorption preconcentration in combined methods for the determination of noble metals are given from publications between 1996–2005.     

Precipitation of Titanium(IV) and Iron(III) Phosphates from Sulfuric Acid Solutions

Conditions for the precipitation of phosphates from solutions of titanium(IV) sulfate containing iron(III) were studied. The precipitation of components and the mechanism of the phase formation in the system under study were considered in relation to the TiO₂ : Fe₂O₃ ratio in the starting solution.     

A mathematical evaluation of dose-dependent PpIX fluorescence kinetics in vivo

The in vivo pharmacokinetics of protoporphyrin IX (PpIX) after administration of 5-aminolevulinic acid (ALA) cannot be described accurately by mathematical models using first-order rate processes. We have replaced first-order reaction rates by dose-dependent (Michaelis-Menten [MM]) reaction rates in a mathematical compartment model. Different combinations of first-order and dose-dependent reaction rates were evaluated to see which one would improve the goodness-of-fit to experimentally determined in vivo PpIX fluorescence kinetics as a function of concentration. The mathematical models that were evaluated are all based on a three-compartment model for drug distribution, conversion to PpIX and subsequent conversion to heme. Implementation of dose-dependent reaction rates improved the goodness-of-fit and enabled interpolation to other drug doses. For most data sets the time constant for delivery to the target cells turned out to be dose dependent. For all data sets the use of MM rates for the conversion of ALA to PpIX yielded better fits. The clearance of PpIX turned out to be a first-order process for all doses and types of administration. Fluorescence curves measured on a specific tissue type but obtained in different studies with different measurement techniques could be described with a single set of parameters.     

Evaluation of an Economical Sunlamp that Emits a Near Solar UV Power Spectrum for Conducting Photoimmunological and Sunscreen Immune Protection Studies

Expense and inconvenience have restricted the use of the filtered xenon are lamp (solar simulator) as a UV source for conducting large-scale animal studies. Because sunscreen immunoprotective levels are significantly affected by the UV power spectrum of the source it is imperative that a solar simulating source be used for accurate measurements of sunscreen protection levels that are relevant to human UV exposures from sunlight. However, relatively inexpensive sunlamps, e. g. the UVA-340, that emit a UV power spectrum similar to that of a solar simulator are available. Unlike FS-type UVB sunlamps, which have a significant amount of effective immunosuppressive nonsolar UV energy at wavelengths below 295 nm, the immunosuppression effectiveness spectrum of UVA-340 sunlamps was nearly identical to that of a solar simulator. The purpose of this study was to evaluate this sunlamp for conducting photoimmunological and sunscreen immune protection studies. Groups of C3H mice were exposed to a range of UVA-340 sunlamp doses (0.25 KJ/m² to 20.0 KJ/m²) to establish a dose-response curve and determine the minimum immune suppression dose (MISD) for induction of local-type suppression of contact hypersensitivity (CH). The MISD, defined as the lowest UV dose given to produce ～50% suppression of the CH response in mice, was determined to be 1.0 kJ/m² for UVA-340 sunlamps. Immune protection tests on four marketed sunscreen lotions (sun protection factors [SPF] 4, 8, 15 and 30) were then conducted with UVA-340 sunlamps using MISD as the endpoint. The immune protection factors for these sunscreens were equivalent to the level of protection predicated by their labeled SPF. These results are similar to those we have previously obtained using a solar simulator. We conclude from these data that the immunosuppressive effects of UVA-340 sunlamps are similar to those of a solar simulator; however, further studies are needed to determine if UVA-340, or similar, sunlamps are a viable alternative to the solar simulator for conducting large-scale animal experiments that require a relevant UV solar spectrum.     

Kinetics of the hydroxylation of N-picryl-4-[4-(dimethylamino)styryl]pyridinium salts by molecular oxygen in acetonitrile

The reactions of N-picryl-4-[4-(dimethylamino)styryl]pyridinium salts with molecular oxygen in the presence of 4-[4-(dimethylamino)styryl]pyridine (DASP) in acetonitrile proceeds with the formation of DASP picrate. The reactions are first-order relative to the salt cation, molecular oxygen, and the catalyst (DASP). L. M. Litvinenko Institute of Physical Organic and Coal Chemistry, National Academy of Sciences of Ukraine, 70 R, Lyuksemburg ul., Donetsk 340114, Ukraine. Translated from Teoreticheskaya i éksperimental'naya Khimiya, Vol. 34, No. 5, pp. 286–289, September–October, 1998.     

Radiation degradation of copolymers of methyl methacrylate and 3-oximino-2-butanone methacrylate

Copolymers of methyl methacrylate and 3-oximino-2-butanone methacrylate (OM) were investigated as deep-UV and e-beam resists. Their increased sensitivity relative to PMMA (up to 50 times) was correlated with the radiation chemical yields of the volatile products and main chain scissions. The degradation of these copolymers, activated by the 3-oximino-2-butanone entity, is discussed in terms of energy absorption mechanisms and the subsequent scission reactions.