Production and purification of organic reagents labeled with radioisotopes produced by an accelerator

We studied the production of nine typical organic analytical reagents labeled with¹¹C,¹³N and¹⁸F by irradiation with charged particles and bremsstrahlung and the purification of labeled compounds with HPLC and sublimation. As a result, we found that six reagents, α-naphthol, β-naphthol, quinoline, α-nitroso-β-naphthol, 8-hydroxyquinoline, and 1,10-phenanthroline H₂O could be labeled with¹¹C by bombarding a mixture of each reagent and boron with protons. More than 10% of the¹¹C was successfully exchanged with carbon atoms in the original reagents. We also found that sublimation is useful for purifying 8-hydroxyquinoline labeled with¹¹C. The extraction property of¹¹C-labeled 8-hydroxyquinoline between water and chloroform could be easily monitored by radioactivity measurement.     

Photo-degradation of imidazolium ionic liquids

Degradation of imidazolium ionic liquid, [bmim⁺][TFSA⁻] and iodide solution of [bmim⁺][TFSA⁻] by UV-laser irradiation has been studied through ground-state absorption and transient absorption spectroscopy. We found that excited state [bmim⁺]* undergoes degradation efficiently.     

Pulse radiolysis study of ion-species effects on the solvated electron in alkylammonium ionic liquids

The spectra and kinetic behavior of solvated electrons (e_sol⁻) in alkyl ammonium ionic liquids (ILs), i.e. N,N-diethyl-N-methyl-N-(2-methoxyethyl)ammonium bis(trifluoromethanesulfonyl)imide (DEMMA-TFSI), N,N-diethyl-N-methyl-N-(2-methoxyethyl)ammonium tetrafluoroborate (DEMMA-BF₄), N,N,N-trimethyl-N-propylammonium bis(trifluoromethanesulfonyl)imide (TMPA-TFSI), N-methyl-N-propylpiperidinium bis(trifluoromethanesulfonyl)imide (PP13-TFSI), N-methyl-N-propylpyrrolidinium bis(trifluoromethanesulfonyl)imide (P13-TFSI), and N-methyl-N-butylpyrrolidinium bis(trifluoromethanesulfonyl)imide (P14-TFSI) were investigated by the pulse radiolysis method. The e_sol⁻ in each of the ammonium ILs has an absorption peak at 1100 nm, with molar absorption coefficients of 1.5–2.3×10⁴ dm³ mol⁻¹ cm⁻¹. The e_sol⁻ decayed by first order with a rate constant of 1.4–6.4×10⁶ s⁻¹. The reaction rate constant of the solvated electron with pyrene (Py) was 1.5–3.5×10⁸ dm³ mol⁻¹ s⁻¹ in the various ILs. These values were about one order of magnitude higher than the diffusion-controlled limits calculated from measured viscosities. The radiolytic yields (G-value) of the e_sol⁻ were 0.8–1.7×10⁻⁷ mol J⁻¹. The formation rate constant of e_sol⁻ in DEMMA-TFSI was 3.9×10¹⁰ s⁻¹. The dry electron (e_dry⁻) in DEMMA-TFSI reacts with Py with a rate constant of 7.9×10¹¹ dm³ mol⁻¹ s⁻¹, three orders of magnitude higher than that of the e_sol⁻ reactions. The G-value of the e_sol⁻ in the picosecond time region is 1.2×10⁻⁷ mol J⁻¹. The capture of e_dry⁻ by scavengers was found to be very fast in ILs.     

Evaluation of the Efficiency of the Macrolactonization Using MNBA in the Synthesis of Erythromycin A Aglycon

Various intermediates for the synthesis of erythronolide A, an aglycon of erythromycin A, are prepared from the corresponding seco‐acids using 2‐methyl‐6‐nitrobenzoic anhydride (MNBA) in the presence of 4‐(dimethylamino)pyridine (DMAP) with or without triethylamine. The efficiency of the MNBA lactonization is assessed by studying this method and comparing the results with those of the other established macrocyclization protocols. It has been finally concluded that (i) the conformationally appropriate substrate for the monomeric cyclization gave the desired lactone in excellent yield under mild reaction conditions in the presence of MNBA and DMAP, (ii) the highly‐strained substrate for the cyclization also afforded the monomeric lactone in relatively good yield at 100°C in toluene, and (iii) the seco‐acid having stable linear conformation, which preferred dimerizing more than forming the monomeric lactone, provided the corresponding diolide in high yield with the constant ratio of the monomer to dimeric lactone (approximately 1/5). © 2009 The Japan Chemical Journal Forum and Wiley Periodicals, Inc. Chem Rec 9: 305–320; 2009: Published online in Wiley InterScience ( www.interscience.wiley.com ) DOI 10.1002/tcr.200900017     

Fast Enumeration Algorithms for Non-crossing Geometric Graphs

A non-crossing geometric graph is a graph embedded on a set of points in the plane with non-crossing straight line segments. In this paper we present a general framework for enumerating non-crossing geometric graphs on a given point set. Applying our idea to specific enumeration problems, we obtain faster algorithms for enumerating plane straight-line graphs, non-crossing spanning connected graphs, non-crossing spanning trees, and non-crossing minimally rigid graphs. Our idea also produces efficient enumeration algorithms for other graph classes, for which no algorithm has been reported so far, such as non-crossing matchings, non-crossing red-and-blue matchings, non-crossing k-vertex or k-edge connected graphs, or non-crossing directed spanning trees. The proposed idea is relatively simple and potentially applies to various other problems of non-crossing geometric graphs.     

Arc-disjoint in-trees in directed graphs

Given a directed graph D = (V,A) with a set of d specified vertices S = {s ₁,…, s _d } ⊆ V and a function f: S → ℕ where ℕ denotes the set of natural numbers, we present a necessary and sufficient condition such that there exist Σ _i=1 ^d f(s _i ) arc-disjoint in-trees denoted by T _i,1,T _i,2,…, for every i = 1,…,d such that T _i,1,…, are rooted at s _i and each T _i,j spans the vertices from which s _i is reachable. This generalizes the result of Edmonds [2], i.e., the necessary and sufficient condition that for a directed graph D=(V,A) with a specified vertex s∈V, there are k arc-disjoint in-trees rooted at s each of which spans V. Furthermore, we extend another characterization of packing in-trees of Edmonds [1] to the one in our case. Supported by JSPS Research Fellowships for Young Scientists. Supported by the project New Horizons in Computing, Grand-in-Aid for Scientific Research on Priority Areas, MEXT Japan.     

Synthesis of (-)-epibatidine and its derivatives from chiral allene-1,3-dicarboxylate esters

(-)-Epibatidine, an excellent candidate of non-opioidal anesthesia, was formally synthesized in short steps from di-(l)-menthyl (R)-allene-1,3-dicarboxylate that was facilely prepared as a single isomer by means of crystallization-induced asymmetric transformation from a diastereomer mixture of (R)- and (S)-allene-1,3-dicarboxylates. Taking advantage of the chiral synthesis, derivatives of (-)-epibatidine were also prepared for targeting diagnostic agents that could bind nicotinic acetylcholine receptors (nAChRs) in the mammalian central nerve system.     

Analysis on heat stress-induced hyperphosphorylation of stathmin at serine 37 in Jurkat cells by means of two-dimensional gel electrophoresis and tandem mass spectrometry

Two-dimensional gel electrophoresis (2-DE) and tandem mass spectrometry were successfully used for determination of a phosphorylation site of stathmin induced by heat stress to Jurkat cells of a human T lymphoblastic cell line. The cells were incubated for 30 min at 41 degrees C up to 45 degrees C in a serum free 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES) buffered culture medium. The intracellular soluble proteins were separated by 2-DE, and some of the proteins increased their abundance by heat stress. Those proteins were identified to be calmodulin, protein kinase C substrate, thymosin beta-4 and F-actin capping protein beta-subunit by peptide mass fingerprinting (PMF) with matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS). On the contrary, protein phosphatase 2C gamma-isoform, nucleophosmin, translationally controlled tumor protein, Rho GDP-dissociation inhibitor-1, eukaryotic translation initiation factors 5A and 3A subunit 2, ubiquitin-like protein SMT 3B and chloride intracellular channel protein-1 were decreased their abundance. A protein spot of M(r) 18,000 and pI 5.9 was markedly increased at temperatures higher than 43 degrees C at which the cells were led to apoptosis. The spot was identified to be stathmin of a signal relay protein which has a function of sequestering microtubule. MALDI-quadrupole ion trap (QIT)-TOF-MS/MS and immunoblotting with a monoclonal antibody specific for a phosphorylation site of stathmin showed that the spot was a phosphorylated stathmin at serine 37 (Ser 37). The phosphorylation was suppressed by treatment of cells with olomoucine of an inhibitor specific for cyclin dependent kinase (Cdk-1). These results strongly suggest that heat stress activates Cdk-1 which phosphorylates Ser 37 on the stathmin molecule. The phosphorylation may cause the functional loss of stathmin for dynamic microtubule assembly and leads Jurkat cells to cell cycle arrest and apoptosis.     

Single nucleotide polymorphism detection method by temperature-gradient affinity chromatography using a single-stranded oligo-DNA coupled column

We developed an affinity chromatographic method for simple single nucleotide polymorphism (SNP) detection by use of a single-stranded DNA-coupled column and temperature gradient elution, utilizing the difference in thermal stability between hybridized double-stranded DNAs with and without mismatched base-pairs in the course of temperature gradient elution. We studied experimentally and theoretically the elution behavior of DNAs with and without SNPs in this chromatography and proposed a numerical calculation method based on a thermodynamic dissociation model. The effects of the column volume, flow rate of eluent and heating rate of the column on elution profiles were clarified. For designing DNA ligands, mismatched base-pair positions favorable for detection of SNPs were also explored by use of hybridized DNAs coding a part of the human TP53 gene.