Hydrophobic scale: a second parameter to elucidating various specific ligand-protein interactions

In the sequence Fourier analysis (SFA) of specific interactions such as those between fibroblast growth factors (FGFs)/FGF receptors (FGFRs), bone morphogenetic proteins (BMPs)/BMP receptors (BMPRs), or tumor repressor protein p53/mouse double minute 2 homolog (MDM2), the characteristic frequency peak(s) could be observed with the hydrophobic scale for 20 amino acids as well as 4 nucleotides as the physicochemical parameter, but not successfully with the absolute electronegativity scale. This result implies that these two independent scales should be appropriately selected in various specific ligand-protein interactions, though the critical difference has to be determined.     

Photochemical ligation of DNA conjugates through anthracene cyclodimer formation and its fidelity to the template sequences

Anthracene readily forms photoadducts, anthracene dimers, and this photodimerization reaction has been well characterized. In general, however, the reaction requires close proximity and certain spatial alignment of both reaction partners. DNA could provide an ideal scaffold for accelerating the photocyclic addition. We synthesized a number of anthracene-DNA conjugates. The sequences of the conjugates, 5'AntODNn and 3'AntODNn (the length of methylene linkers: n = 3 or 6), were designed to bind adjacent sequences of the template with the anthracene units directed such that they stacked with each other. The conjugates were only dimerized in the presence of the template by light irradiation. The efficiency was affected by one-base displacement in the template sequence.     

A direct electrochemical route to construct a polymer/manganese oxide layered structure

A layered nanocomposite with poly(diallyldimethylammonium), PDDA, intercalated between manganese oxide layers can be formed on a platinum electrode in a thin film form through a direct electrochemical route. The process involves a potentiostatic oxidation of aqueous Mn(2+) precursors in the presence of PDDA by applying a constant potential (+1.0 V vs Ag/AgCl).     

Construction of a square-planar hydroperoxo-copper(II) complex inducing a higher catalytic reactivity

A novel hydroperoxo-copper(II) complex with a square-planar geometry has been prepared, which has exhibited a higher selectivity and catalytic reactivity for dimethyl sulfide, in contrast to that with a trigonal-bipyramidal one.     

How well can we reconstruct the $t\bar{t}$ system near its threshold at future ee linear colliders?

We developed a new method for the full kinematical reconstruction of the system near its threshold at future linear e ⁺ e ^- colliders. In the core of the method lies likelihood fitting which is designed to improve measurement accuracies of the kinematical variables that specify the final states resulting from decays. The improvement is demonstrated by applying this method to a Monte Carlo sample generated with various experimental effects including beamstrahlung, finite acceptance and resolution of the detector system, etc. In most cases the fit takes a broad non-Gaussian distribution of a given kinematical variable to a nearly Gaussian shape, thereby justifying phenomenological analyses based on simple Gaussian smearing of the parton-level momenta. The standard deviations of the resultant distributions of various kinematical variables are given in order to facilitate such phenomenological analyses. A possible application of the kinematical fitting method and its expected impact are also discussed. Received: 4 March 2003 / Published online: 23 May 2003 RID="a" ID="a" e-mail: ikematsu@post.kek.jp RID="b" ID="b" e-mail: fujiik@jlcuxf.kek.jp RID="c" ID="c" e-mail: hioki@ias.tokushima-u.ac.jp RID="d" ID="d" e-mail: sumino@tuhep.phys.tohoku.ac.jp RID="e" ID="e" e-mail: tohrut@hiroshima-u.ac.jp     

Spatiotemporal symmetry in rings of coupled biological oscillators of Physarum plasmodial slime mold

Spatiotemporal patterns in rings of coupled biological oscillators of the plasmodial slime mold, Physarum polycephalum, were investigated by comparing with results analyzed by the symmetric Hopf bifurcation theory based on group theory. In three-, four-, and five-oscillator systems, all types of oscillation modes predicted by the theory were observed including a novel oscillation mode, a half period oscillation, which has not been reported anywhere in practical systems. Our results support the effectiveness of the symmetric Hopf bifurcation theory in practical systems.     

Measurement of B(0)(d)-B_(0)(d) mixing rate from the time evolution of dilepton events at the upsilon(4S)

We report a determination of the B(0)(d)-&B_(0)(d) mixing parameter Deltam(d) based on the time evolution of dilepton yields in Upsilon(4S) decays. The measurement is based on a 5.9 fb(-1) data sample collected by the Belle detector at KEKB. The proper-time difference distributions for same-sign and opposite-sign dilepton events are simultaneously fitted to an expression containing Deltam(d) as a free parameter. Using both muons and electrons, we obtain Deltam(d) = 0.463+/-0.008 (stat)+/-0.016 (syst) ps(-1). This is the first determination of Deltam(d) from time evolution measurements at the Upsilon(4S). We also place limits on possible CPT violations.     

Observation of large CP violation in the neutral B meson system

We present a measurement of the standard model CP violation parameter sin2 phi(1) based on a 29.1 fb(-1) data sample collected at the Upsilon(4S) resonance with the Belle detector at the KEKB asymmetric-energy e(+)e(-) collider. One neutral B meson is fully reconstructed as a J/psi K(S), psi(2S)K(S), chi(c1)K(S), eta(c)K(S), J/psi K(L), or J/psi K(*0) decay and the flavor of the accompanying B meson is identified from its decay products. From the asymmetry in the distribution of the time intervals between the two B meson decay points, we determine sin2 phi(1) = 0.99+/-0.14(stat)+/-0.06(syst). We conclude that we have observed CP violation in the neutral B meson system.     

Frequency dependence of H2O2 generation from distilled water

The frequency dependence of H2O2 generation from H2O by a sonochemical reaction was detected experimentally. The results are in good agreement with previous experimental results, which indicate that in sonochemical reactions, frequencies higher than 90 kHz are more effective than frequencies of several tens of kilohertz. The phonon concept of acoustic waves makes it clear that energy depends on frequency, i.e. on the condition of equal phonon density; higher frequency means higher energy. The concentration and accumulation of acoustic energy will be performed through a bubble surface. From the analogy of photoelectric effects, the frequency dependence of the sonochemical reaction was discussed using the phonon concept.