An Isoreticular Family of Microporous Metal-Organic Frameworks Based on Zinc and 2-Substituted Imidazolate-4-amide-5-imidate: Syntheses, Structures and Properties

We report on a new series of isoreticular frameworks based on zinc and 2-substituted imidazolate-4-amide-5-imidate (IFP-1-4, IFP=imidazolate framework Potsdam) that form one-dimensional, microporous hexagonal channels. Varying R in the 2-substitued linker (R=Me (IFP-1), Cl (IFP-2), Br (IFP-3), Et (IFP-4)) allowed the channel diameter (4.0-1.7??), the polarisability and functionality of the channel walls to be tuned. Frameworks IFP-2, IFP-3 and IFP-4 are isostructural to previously reported IFP-1. The structures of IFP-2 and IFP-3 were solved by X-ray crystallographic analyses. The structure of IFP-4 was determined by a combination of PXRD and structure modelling and was confirmed by IR spectroscopy and (1) H?MAS and (13) C?CP-MAS?NMR spectroscopy. All IFPs showed high thermal stability (345-400?°C); IFP-1 and IFP-4 were stable in boiling water for 7?d. A detailed porosity analysis was performed on the basis of adsorption measurements by using various gases. The potential of the materials to undergo specific interactions with CO(2) was investigated by measuring the isosteric heats of adsorption. The capacity to adsorb CH(4) (at 298?K), CO(2) (at 298?K) and H(2) (at 77?K) at high pressure were also investigated. In situ IR spectroscopy showed that CO(2) is physisorbed on IFP-1-4 under dry conditions and that both CO(2) and H(2) O are physisorbed on IFP-1 under moist conditions.     

Inkjet printing of reinforcing patterns for the mechanical stabilization of fragile polymeric microsieves

Inkjet printing is employed to apply a mechanically stable reinforcing pattern to polymeric microsieves prepared by float casting, where particles are used as molds for the pores. A mixture of silica particles and nonvolatile monomers is cast onto a water surface and subsequently photopolymerized to produce membranes consisting of a polymer film with embedded particles. These composite membranes are transferred onto an aluminum foil. Subsequently, a UV-curable ink is directly inkjet-printed onto the membranes in line patterns of grids or honeycombs and cured by UV radiation to create a mechanically reinforcing pattern. Afterwards, the particles and the aluminum foil are removed by chemical etching. The reinforcing pattern overcasts 40% of the previously manufactured membrane, is mechanically stable, and gives the microsieves such a robustness that they can be handled in further manufacturing processes.     

De novo analysis of electron impact mass spectra using fragmentation trees

The automated fragmentation analysis of high resolution EI mass spectra based on a fragmentation tree algorithm is introduced. Fragmentation trees are constructed from EI spectra by automated signal extraction and evaluation. These trees explain relevant fragmentation reactions and assign molecular formulas to fragments. The method enables the identification of the molecular ion and the molecular formula of a metabolite if the molecular ion is present in the spectrum. These identifications are independent of existing library knowledge and, thus, support assignment and structural elucidation of unknown compounds. The method works even if the molecular ion is of very low abundance or hidden under contaminants with higher masses. We apply the algorithm to a selection of 50 derivatized and underivatized metabolites and demonstrate that in 78% of cases the molecular ion can be correctly assigned. The automatically constructed fragmentation trees correspond very well to published mechanisms and allow the assignment of specific relevant fragments and fragmentation pathways even in the most complex EI-spectra in our dataset. This method will be very helpful in the automated analysis of metabolites that are not included in common libraries and it thus has the potential to support the explorative character of metabolomics studies.     

Fabrication of Thermo‐Responsive Hybrid Hydrogels by In‐Situ Mineralization and Self‐Assembly of Microgel Particles

Summary: An in‐situ mineralization process in the presence of thermo‐responsive microgels leads to the formation of well‐defined hybrid materials. Experimental data suggest that control of the mineralization process in the presence of the microgels offers the possibility to obtain sub‐micrometer‐sized hybrid particles or macroscopic hybrid hydrogels. The rapid formation of CaCO₃ crystals in the microgel structure favors the preparation of the hybrid particles wherein inorganic crystals cover the shell layer of the microgel. The slow formation of CaCO₃ crystals leads to the simultaneous self‐assembly of the microgel particles on the bottom of the reaction vessel, and the formation of a physical network. It has been demonstrated that hybrid hydrogel materials with different calcium carbonate contents and temperature‐dependent swelling‐deswelling properties can be prepared.

Formation of a hybrid hydrogel by the vapor diffusion method.     

Fast and Efficient Postsynthetic DNA Labeling in Cells by Means of Strain-Promoted Sydnone-Alkyne Cycloadditions

Sydnones are highly stable mesoionic 1,3-dipoles that react with cyclooctynes through strain-promoted sydnone-alkyne cycloaddition (SPSAC). Although sydnones have been shown to be valuable bioorthogonal chemical reporters for the labeling of proteins and complex glycans, nucleic acids have not yet been tagged by SPSAC. Evaluation of SPSAC kinetics with model substrates showed fast reactions with cyclooctyne probes (up to k=0.59 M⁻¹ s⁻¹), and two different sydnones were effectively incorporated into both 2’-deoxyuridines at position 5, and 7-deaza-2’-deoxyadenosines at position 7. These modified nucleosides were synthetically incorporated into single-stranded DNAs, which were successfully postsynthetically labeled with cyclooctyne probes both in vitro and in cells. These results show that sydnones are versatile bioorthogonal tags and have the premise to become essential tools for tracking DNA and potentially RNA in living cells.     

De Novo Designed α-Helical Coiled-Coil Peptides as Scaffolds for Chemical Reactions

Coiled coils (CCs) are well-understood protein-folding motifs. They appear in a variety of oligomer states and as homo- and heteromeric assemblies. This versatility and the general accessibility by de novo design makes them ideal building blocks for synthetic biology. This Minireview highlights the efforts being made in designing small peptide catalysts or reaction templates based on the CC scaffold. The first reports described autocatalysis or mediation of peptide ligation based on CC recognition. Over the years, the designs became more advanced, catalyzing ester hydrolysis, acyl transfer and redox reactions with partial enzyme-like reactivity. Due to the ability to control CC assembly, and, in heterodimeric systems, the association and dissociation, the CC motif has become a common peptide tag in chemical biology.     

A new benzoquinone-bridged porphyrin

The bridged porphyrin 6 was prepared via the bis(dipyrrylmethane) compounds 3, 4 and 5, by demethylation of 6 and oxidation the benzoquinone/porphyrin system 2 was obtained. The strong fluorescence quenching of 2, as compared to 6, is explained on the basis of an electron-transfer from porphyrin to quinone in the S₁ state.     

Molecular structure and fluorescence behaviour of a benzoquinone/porphyrin/benzoquinone sandwich-molecule

For the benzoquinone/porphyrin/benzoquinone sandwich-molecule 1 a highly symmetrical structure with parallel ring planes and interplanar distances of 342 pm was derived from X-ray analysis. 1 shows, in comparison to 2, a very strong quenching of fluorescence indicating intramolecular electron transfer.