EFFECT OF THYMINE DIMER INTRODUCTION IN A 21 BASE PAIR OLIGONUCLEOTIDE

Abstract— It is well known that the pyrimidine dimers are the main damage produced by UV radiation on the DNA structure. However, while studies on the photoproduct structure have been carried out extensively, uncertainties still exist on the implication that a single damaging event has on the overall conformation. In particular, the extension of the damage influence on the polynucleotide chain is a matter of debate. This problem is especially important to understanding some steps of the repair mechanisms. In this study we performed a chemical-physical characterization of 21 base pair oligonucleotides containing a single thymine dimer in one strand. Thermodynamic parameters were determined by means of thermal denaturation experiments, and static fluorescence measurements were performed to unequivocally define the primary structure-conformation relationship in this specific case. We used hydroxyl radicals, produced by means of γ-irradiation of the sample solution, to detect fine structure changes. Our data show that the introduction of a single thymine dimer might cause only a slight distortion of the helix geometry, as judged by the evaluation of the enthalpic and the entropic terms and by the small changes observed in the binding of ethidium bromide to DNA. The modifications in the sugar phosphate backbone subsequent to the damaging event are especially evident, near the thymine dimer, toward the 5'-end direction in the strand containing the dimer.     

Partial characterizations of clique-perfect graphs I: Subclasses of claw-free graphs

A clique-transversal of a graph G is a subset of vertices that meets all the cliques of G. A clique-independent set is a collection of pairwise vertex-disjoint cliques. The clique-transversal number and clique-independence number of G are the sizes of a minimum clique-transversal and a maximum clique-independent set of G, respectively. A graph G is clique-perfect if these two numbers are equal for every induced subgraph of G. The list of minimal forbidden induced subgraphs for the class of clique-perfect graphs is not known. In this paper, we present a partial result in this direction; that is, we characterize clique-perfect graphs by a restricted list of forbidden induced subgraphs when the graph belongs to two different subclasses of claw-free graphs.     

Magnetization recovery for signal enhancement: a fast imaging DEFT-based technique

This paper describes the development and application of a new fast MRI technique based on the DEFT principle. The sequence named MAgnetization RecoverY for Signal Enhancement (MARYSE) is composed of two completely symmetric gradient echoes separated by a 180 degrees refocusing pulse. The RF pulse scheme, 90 degrees x-180 degrees y-90 degrees -x enables restoration of the transverse magnetization along the longitudinal axis, and consequently artificially increases R1 relaxation rate. In this sequence, the period between the excitation pulse and the restoring pulse (Tem: transverse magnetization evolution time) is very short (< 10 ms). This makes possible a significant increase in signal-to-noise ratio, even with a relatively short repetition time (20 ms). Simulations were performed for different values of Tem and TR at definite T1 and T2 and for different values of T1 and T2 at constant Tem and TR. Relevant signal enhancement for species with long relaxation time constants as compared to classical gradient echo and fast spin-echo imaging was expected. In vitro studies on a fat/water phantom confirmed this simulation. Application of MARYSE to mouse brain imaging permitted to visualize almost completely cerebrospinal fluid of the ventricles, a signal usually partially saturated in fast gradient echo imaging.     

Correlations among inorganic and organic elements in particulate matter (PM10) in urban area of Venezia-Mestre

Concentrations of inhalable particulate matter (PM10), Pb, Zn, Pt, Ce, Cd, Se and of Benzo(a)pyrene (BaP) were determined in three locations near Venice from September 2000 to September 2001. Meteorological conditions were considered during the sampling period. All components showed higher concentrations during winter, except for Cd and Se in the two sites at Mestre. Spatial and temporal variations were observed. There were correlations between Pb and Zn and PM10, Cd and Se, Pb and BaP and, in the main street sampling site, also between BaP and Pt. Their possible sources of emission are discussed on the basis of correlations among elements.     

"High specific activity" radiotracers for metallo-toxicological studies: cyclotron and nuclear reactor production,radiochemical separation and "quality control": platinum,iridium, gold,copper and gallium

Very High Specific Activity RadioNuclides, HSARN, are a powerful tool to label a wide variety of chemical elements and compounds present in the biosphere in ultra-trace amounts. Medium and high Z radionuclides, can be produced by irradiation in light-ions accelerator and sometimes nuclear reactor. If the nuclear reaction product has atomic number different from irradiated target, it is possible separating the radioactive nuclide from irradiated target, without addition of isotopic carrier. These kinds of radionuclides are named No Carrier Added, NCA, and their specific activity is very high and can reach values close to the theoretical Carrier Free one. The true specific activity must be determined by use of very sensitive radioanalytical techniques. If a low isotopic dilution factor is obtained, these radiotracers are used to label inorganic species and complexes of elements, which are presently introduced into the echo-systems by human activities. New production methods for NCA Pt, Ir, Au, Cu and Ga radiotracers are presented, with some details on radiochemistry and quality controls.     

Triggering Gel Formation and Luminescence through Donor–Acceptor Interactions in a C3‐Symmetric Tris(pyrene) System

Straightforward modulation of the gelation, absorption and luminescent properties of a tris(pyrene) organogelator containing a C₃‐symmetric benzene‐1,3,5‐tricarboxamide central unit functionalized by three 3,3′‐diamino‐2,2′‐bipyridine fragments is achieved through donor–acceptor interactions in the presence of tetracyanoquinodimethane.     

On the Lebesgue decomposition for non-additive functions

A Lebesgue decomposition theorem for non-additive functions, acting on a \(\sigma \) -complete orthomodular lattice and taking values in Hausdorff uniform spaces, is established. No algebraic structure is required on target spaces. The Boolean case is also investigated.     

The Terminal-Oriented Ship Stowage Planning Problem

The Ship Stowage Planning Problem is the problem of determining the optimal position of containers to be stowed in a containership. In this paper we address the problem considering the objectives of the terminal management that are mainly related to the yard and transport operations. We propose a Binary Integer Program and a two-step heuristic algorithm. An extensive computational experience shows the efficiency and effectiveness of our approach. A classification scheme for stowage planning problems is also provided.