The role of the dynamic pressure in stationary heat conduction of a rarefied polyatomic gas

The effect of the dynamic pressure (non-equilibrium pressure) on stationary heat conduction in a rarefied polyatomic gas at rest is elucidated by the theory of extended thermodynamics. It is shown that this effect is observable in a non-polytropic gas. Numerical studies are presented for a para-hydrogen gas as a typical example.     

Dispersion analysis of triangle-based spectral element methods for elastic wave propagation

We study the numerical dispersion/dissipation of Triangle-based Spectral Element Methods (TSEM) of order N????1 when coupled with the Leap-Frog (LF) finite difference scheme to simulate the elastic wave propagation over a structured triangulation of the 2D physical domain. The analysis relies on the discrete eigenvalue problem resulting from the approximation of the dispersion relation. First, we present semi-discrete dispersion graphs by varying the approximation polynomial degree and the number of discrete points per wavelength. The fully-discrete ones are then obtained by varying also the time step. Numerical results for the TSEM, resp. TSEM-LF, are compared with those of the classical Quadrangle-based Spectral Element Method (QSEM), resp. QSEM-LF.     

Composite Likelihood Inference in a Discrete Latent Variable Model for Two-Way “Clustering-by-Segmentation” Problems

We consider a discrete latent variable model for two-way data arrays, which allows one to simultaneously produce clusters along one of the data dimensions (e.g., exchangeable observational units or features) and contiguous groups, or segments, along the other (e.g., consecutively ordered times or locations). The model relies on a hidden Markov structure but, given its complexity, cannot be estimated by full maximum likelihood. Therefore, we introduce a composite likelihood methodology based on considering different subsets of the data. The proposed approach is illustrated by simulation, and with an application to genomic data.     

Phylogenetic analysis and homology modelling of <Emphasis Type="Italic">Paracentrotus lividus</Emphasis> nectin

The extracellular matrix protein Pl-nectin, a 210-kDa homodimer originally purified from sea urchin eggs, plays a crucial role in cell adhesion and embryonic morphogenesis. The compiled cDNA sequence, obtained by RT-PCR primer walking and 3′ RACE, identified a 984aa product containing a 23aa signal peptide and including all six internal peptides identified by protein microsequencing. The protein is a new member of the galactose-binding protein superfamily as it consists of six 151–156aa-long tandemly repeated domains (D1–D6), homologous to the discoidin-like domains, also known as F5/8-type C domains. Based on homology modelling, we present a three-dimensional structure (3D) for D5, identified as the prototype domain. The molecular modelling of the assembled Pl-nectin homodimer accounts for a Pl-nectin quaternary structure composed of two 105-kDa C-shaped monomers linked by a S–S bridge. The presence of an LDT motif between the first and the second exposed loops of the D2 domain suggests the binding of Pl-nectin to an integrin receptor. Altogether, the in silico analysis described here is consistent with previous biochemical reports and offers a basis for predictions to be experimentally tested.