Bromo­di­methyl(N‐methyl­pyrrolidin‐2‐one‐O)­tin(IV)‐di‐μ‐bromo‐bromo­di­methyl­tin(IV)

The preparation and X‐ray analysis of the title compound, [Sn₂Br₄(CH₃)₄(C₅H₉NO)], are described. The compound contains two Sn atoms in the asymmetric unit, that complexed by N‐methyl­pyrrolidin‐2‐one being hexacoordinated (a), the other exhibiting pentacoordination (b). The most important features are three different Sn—Br bond lengths at both Sn atoms with the following values: (a) 2.5060 (9), 2.7152 (10) and 3.7118 (10) Å; (b) 2.5084 (10), 2.5279 (9) and 3.5841 (10) Å.     

The peptide (Z)‐Pro–Leuol

The structure of the synthetic protected dipeptide (Z)‐Pro–Leuol [systematic name: benzyl 2‐(1‐hydroxy­methyl‐3‐methyl­butyl­amino­carbonyl)­pyrrolidine‐1‐carboxyl­ate], C₁₉H₂₈N₂O₄, was determined by X‐ray crystallography. The peptide adopts a novel backbone conformation compared with other longer oligopeptides containing Pro–Leuol.     

In-situ detection of drugs-of-abuse on clothing using confocal Raman microscopy

This study describes the application of confocal Raman microscopy to the detection and identification of drugs-of-abuse in situ on undyed natural synthetic fibres, and coloured textile specimens. Raman spectra were obtained from drug particles trapped between the fibres of the specimens. Pure samples of cocaine hydrochloride and N-methyl-3,4-methylenedioxy-amphetamine HCl (MDMA-HCl) were used in this study. Raman spectra were collected from drug particles of an average size in the range 5-15 μm. Despite the presence of spectral bands arising from the natural and synthetic polymer and dyed textiles, the drugs could be identified by their characteristic Raman bands. If necessary, interfering bands could be successfully removed by spectral subtraction. Furthermore, Raman spectra were recorded from drug particles trapped between the fibres of highly fluorescent specimens. Interference from the fibres, including background fluorescence, was overcome by careful focusing of the confocal beam and the resulting spectra allow ready differentiation from interference from the fibres substrate bands. Spectra of several drugs-of-abuse on dyed and undyed clothing substrates were readily obtained within 3 min with little or no sample preparation and with no alteration of the evidential material.     

Selective extraction and elution of weak bases by in-line solid-phase extraction capillary electrophoresis using a pH step gradient and a weak cation-exchange monolith

A polymer monolith bearing weak cation-exchange functionality was prepared for the purpose of demonstrating pH-selective extraction and elution in in-line solid-phase extraction-capillary electrophoresis (SPE-CE) utilising a model set of cationic analytes, namely imidazole, lutidine and 3-phenylpropanamine. Optimization of the electrolyte conditions for efficient elution of the adsorbed analytes using a moving pH boundary required that the capillary and monolith be filled with 44 mM sodium acetate at high pH (pH 6) and a low pH electrolyte of 3 mM sodium acetate pH 3 was placed in the electrolyte vials. This combination allowed the adsorbed analytes to be simultaneously eluted and focused into narrow bands, with peak widths of the eluted analytes having a baseline width of 1.2 s immediately after the monolith. Using these optimum elution conditions, the versatility of the SPE-CE approach was demonstrated by removing unwanted adsorbed components after extraction with a wash at a different pH and also by selecting a pH at which only some of the model weak bases were ionised. The analytical performance of the approach was evaluated and the relative standard deviation for peak heights, peak area and migration times were in the ranges of 1.4-5.3, 1.2-3.3 and 0.4-1.2% respectively. Analytes exhibited linear calibrations with r(2) values ranging from 0.996 to 0.999 over two orders of magnitude. Analyte pre-concentration provided excellent sensitivity, and limits of detection for the analyte used in this study were in the range 8.0-30 ng ml(-1), which was an enhancement of 63 when compared to normal hydrodynamic injection occupying 1.3% of the capillary of these bases in water.     

Stationary phases for chromatography prepared by ring opening metathesis polymerization

The chemistry of metathesis polymerization-derived stationary phases is summarized. Since both ring-opening metathesis and 1-alkyne polymerization triggered by well-defined transition metal alkylidenes are living polymerization methods, they allow for the controlled and highly reproducible synthesis of stationary phases in terms of both the nature and total content of the functional group(s) of interest. In addition, the high functionality tolerance of these polymerization techniques allows for creating chromatographic supports with an unprecedented diversity in terms of functional groups that may be introduced. Their applications in various areas of separation science such as SPE, ion-chromatography, RP chromatography, chiral chromatography, and the high-performance liquid chromatographic separation of biomolecules are summarized. Within the context of the latter topic, special attention will be given to metathesis polymerization-derived monolithic supports. Consideration will also be given to those aspects of polymer chemistry that are relevant to the separation performance of these supports.     

Estimation of the persistence length of DNA from the torsion elastic constant and supercoiling free energy: effect of ethylene glycol

Two different methods are proposed to estimate the persistence length ( P) of DNA from the measured torsion elastic constant (alpha) and the twist energy parameter ( E T ) that governs the supercoiling free energy. The first method involves Monte Carlo simulations and reversible-work calculations of E T for model DNAs that possess the measured alpha and selected trial values of P. Comparison of the computed E T values with the experimental value allows estimation of P (or equivalently the bending elastic constant (kappa beta)) by interpolation. A far simpler, though less accurate, alternative is to solve a previously conjectured analytical relation connecting E T , alpha, kappa beta (or P), and an unknown "constant" ( B). The present simulations are used to ascertain the optimum value of B and to assess the validity and accuracy of that relation. Within the simulation errors, P values obtained from the measured alpha and E T via this analytical expression agree with those determined from the simulations and E T values reckoned from the input alpha and kappa beta by this analytical expression agree with the corresponding simulated values. Although B is found to be insensitive to variation in alpha, it appears to decline slightly with increasing kappa beta. The original analytical expression is modified to take this apparent variation of B with kappa beta into account. By using this modified analytical relation to estimate P (from the measured alpha and E T ) or E T (from the input alpha and kappa beta), much closer agreement is obtained respectively with the values of P or E T obtained from the simulations. As specific examples, these methods are applied to determine P in 0 and 20 w/v % ethylene glycol, which has been shown to induce a structural transition in duplex DNA.     

Singlet-triplet energy splitting and excited states of phenylnitrene

The vertical and adiabatic singlet-triplet energy splittings (Delta E ST) of phenylnitrene were computed by a variety of multireference configuration interaction and perturbation theory methods employing basis sets of up to quadruple-xi quality and extrapolation to the complete basis set limit. The vertical and adiabatic energy gaps are 18.9 and 15.9 kcal mol (-1), respectively, the latter in reasonable agreement with the revised experimental value of 15.1 +/- 0.2 kcal mol (-1). The energy difference between both states at the geometry of the a (1)A 2 singlet state was also considered and amounts to 13.8 kcal mol (-1). In obtaining accurate state energy splittings, basis set completeness turns out to be a more important issue than the level of dynamical electron correlation treatment. Density functional theory that is frequently employed to investigate phenylnitrenes and their rearrangements yields varying results and, depending on the functional, gives adiabatic energy differences between 9 and 16 kcal mol (-1). The b (1)A 1 state has a similar geometry as the ground state of 1 and is 31 kcal mol (-1) higher in energy. According to best estimates, the next higher singlet states, c (1)A 1 and d (1)B 1, are 57 and 72 kcal mol (-1) above the ground state. In the triplet manifold, vertical excitation energies to the A (3)B 1 and B (3)A 2 states are 71 and 77 kcal mol (-1), respectively.     

Spatial dynamics of steady flames 1. Phase space structure and the dynamics of individual trajectories

The spatial dynamics of steady, one-dimensional premixed H 2/O 2 flames are studied. The emphasis in this Article is the geometry of the phase space of the dynamical system describing the steady flames. It is shown that steady flames are described by trajectories on the stable manifolds of saddle fixed points. The saddle fixed points correspond to equilibrium points of time-dependent chemical-kinetic systems that are adiabatic and isobaric and whose constant enthalpy matches the asymptotic enthalpy of the flames. The dimensions of the stable manifolds match the dimensions of the chemical-kinetic systems under most conditions, although the dynamics on them are different. It is further shown that the stable manifolds have low-dimensional attractive submanifolds near the saddlepoint. An algorithm for generating trajectories over the spatial domain of these flames is proposed, and it is used to study individual trajectories and trajectory ensembles, whose collective behavior suggests that there are low-dimensional submanifolds away from the saddlepoint.     

Binding sites of the viral RNA element TAR and of TAR mutants for various peptide ligands, probed with LILBID: A new laser mass spectrometry

A new laser-based mass spectrometry method, called laser induced liquid bead ion desorption (LILBID), was applied to investigate RNA:ligand interactions. As model system the HIV Tat:TAR transactivation complex and its binding behavior were analyzed. TARwt of HIV Type 1 and Type 2 and different artificial mutants were compared regarding their binding to Tat and different peptide ligands. Specific and nonspecific association to TAR was deduced, with the bulge being the well known specific binding site of TAR. In the case of triple arginine (RRR) as a nonspecific ligand, multiple electrostatic binding to TAR was found at higher concentration of RRR. This contrasted with the formation of only ternary complexes in competitive binding studies with TAR, Tat, and potential inhibitors. The fact that the stoichiometries of the complexes can be determined is a major advantage of MS methods over the widely applied fluorimetric methods. A quantitative evaluation of the spectra by a numeric model for ternary complex formation allows conclusions about the role and strength of the binding sites of the RNAs, the specificity and affinity of different ligands, the determination of apparent IC50 and KD values, and a comparison of the binding efficiencies of potential inhibitors.