A novel ultrasonic strain gauge for single-sided measurement of a local 3D strain field

A novel method is introduced for the measurement of a 3D strain field by exploiting the interaction between ultrasound waves and geometrical characteristics of the insonified specimen. First, the response of obliquely incident harmonic waves to a deterministic surface roughness is utilized. Analysis of backscattered amplitudes in Bragg diffraction geometry then yields a measure for the in-plane strain field by mapping any shift in angular dependency. Secondly, the analysis of the reflection characteristics of normal incident pulsed waves in frequency domain provides a measure of the out-of-plane normal strain field component, simply by tracking any change in the stimulation condition for a thickness resonance. As such, the developed ultrasonic strain gauge yields an absolute, contactless and single-sided mapping of a local 3D strain field, in which both sample preparation and alignment procedure are needless. Results are presented for cold-rolled DC06 steel samples onto which skin passing of the work rolls is applied. The samples have been mechanically loaded, introducing plastic strain levels ranging from 2 % up to 35 %. The ultrasonically measured strains have been validated with various other strain measurement techniques, including manual micrometer, longitudinal and transverse mechanical extensometer and optical mono- and stereovision digital image correlation. Good agreement has been obtained between the ultrasonically determined strain values and the results of the conventional methods. As the ultrasonic strain gauge provides all three normal strain field components, it has been employed for the extraction of Lankford ratios at different applied longitudinal plastic strain levels, revealing a strain dependent plastic anisotropy of the investigated DC06 steel sheet.     

Candida "psilosis"--electromigration techniques and MALDI-TOF mass spectrometry for phenotypical discrimination

Biofilm-positive strains of Candida parapsilosis are the second most common yeasts responsible for bloodstream infections. This pathogen is difficult to identify by standard methods from other phenotypically indistinguishable species, biofilm-negative Candida orthopsilosis and biofilm-positive Candida metapsilosis. From a medical point of view, important information is especially whether the strains form biofilm. The biofilm formation enables yeast to colonize artificial surfaces thereby protecting the yeast cell against antifungal agents. The commonly used genotypic methods including different modifications of the polymerase chain reaction have some disadvantages. Therefore, a rapid and reliable method able to identify phenotypically indistinguishable C. "psilosis" species is still of great interest. In this study, the four well-established analytical techniques: gel isoelectric focusing, sodium dodecyl sulfate polyacrylamide gel electrophoresis, two-dimensional gel electrophoresis and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry, were applied in order to discriminate C. "psilosis" species. The ability of these techniques to differentiate between biofilm-positive and biofilm-negative strains was further investigated. Our results have revealed that the proposed methods, especially matrix-assisted laser desorption/ionization time-of-flight mass spectrometry of intact yeast cells, can be used as the efficient tools for discrimination and identification of the phenotypically indistinguishable microorganisms.     

Linear Pencils of Tropical Plane Curves

Linear pencils of tropical plane curves are parameterized by tropical lines (i.e. trees) in the space of coefficients. We study pencils of tropical curves with n-element support that pass through n?2 general points in the plane. Richter-Gebert et al. proved that such trees are compatible with their support set, and they conjectured that every compatible tree can be realized by a point configuration. In this article, we prove this conjecture. Our approach is based on a characterization of the fixed loci of tropical linear pencils.     

Characterisation of ergodic upper transition operators

We study ergodicity for upper transition operators: bounded, sub-additive and non-negatively homogeneous transformations of finite-dimensional linear spaces. Ergodicity provides a necessary and sufficient condition for Perron–Frobenius-like convergence behaviour for upper transition operators. It can also be characterised alternatively: (i) using a coefficient of ergodicity, and (ii) using accessibility relations. The latter characterisation states that ergodicity is equivalent with there being a single maximal communication (or top) class that is moreover regular and absorbing. We present an algorithm for checking these conditions that is linear in the dimension of the state space for the number of evaluations of the upper transition operator.     

Emergence of regular meandered step structure in simulated growth of GaN(0001) surface

Step meandering during the growth of gallium nitride crystal is studied on using kinetic Monte Carlo method. Cause of instability is identified to be the particle advection caused by the step flow. Growth process is conducted in N-rich conditions and GaN(0001) surface kinetics is modeled by setting jump probabilities for Ga atoms adsorbed at the surface. We show that at low enough temperatures and relatively high external particle fluxes periodic regular pattern of meanders is created with its wavelength inversely proportional to the particle flux. An increase of the meander amplitude saturates after some period and further crystal grow is stationary, creating “finger-like” structure. For medium fluxes regular structure of meanders builds up for low or zero value of Schwoebel barrier. For higher fluxes wavelengths of meanders become shorter than the terrace width and they start to grow independently and finally transfer the surface to a rough structure. For very low fluxes or at relatively high temperatures steps move steadily remaining their initial shapes of straight, parallel lines.     

Engineered 3D microporous gelatin scaffolds to study cell migration

Here we present a facile method to fabricate microporous hydrogel scaffolds that can be functionalized with a chemokine gradient. These scaffolds allow studying cellular responses in a 3D environment.     

Advances in zebrafish high content and high throughput technologies

The zebrafish has emerged as an excellent transitional screening model system between cell-based assays, which are rapid and inexpensive but have limited physiological relevance, and higher vertebrate models, which have better physiological relevance, but are more time-consuming and expensive to deploy. As vertebrates, zebrafish maintain significant evolutionary proximity to humans and have been validated as robust models for drug research, studies of mechanism and behavioral genetics. Unlike higher vertebrate models, zebrafish are well-suited to high-throughput applications owing to their high fecundity, rapid extrauterine development and transparency during organogenesis enabling in vivo labeling and imaging. Recent advances have been made in automating high content and high-throughput zebrafish screens, with the goal of developing fully automated drug screening platforms. The application and continued development of these technologies holds potential clinical significance in drug discovery and elucidating disease mechanisms.     

QCMS2 as a new method for providing insight into peptide fragmentation: The influence of the side‐chain and inter–side‐chain interactions

The identification of peptides and proteins from tandem mass spectra is a difficult task and multiple tools have been developed to aid this identification. We present a new method called quantum chemical mass spectrometry for materials science (QCMS²), which is based on quantum chemical calculations of bond orders, reaction, and transition‐state energies at the DFT/B3LYP/6‐311+G* level of theory. The method was used to describe the fragmentation pathways of five X‐His‐Ser tripeptides with X = Asn, Asp, Glu, Ser, and Trp, thereby focusing on the influence of the side chain and inter–side‐chain interactions on the fragmentation. The main features in the mass spectra of the five tripeptides were correctly reproduced, and a number of fragments were assigned to fragmentations involving the side chain and the influence of inter–side‐chain interactions. Product ion spectra were recorded to evaluate the capabilities and limitations of QCMS² and a number of conventional tools.     

A Metal-Doped Fungi-Based Biomaterial for Advanced Electrocatalysis

Nature and its highly sophisticated biomaterials are an endless source of inspiration for engineers and scientists across a wide range of disciplines. During the last decade, concepts of bioinspired synthesis of hierarchically structured nano- and micromaterials have been attracting increasing attention. In this article, we have utilized the natural ability of fungi to absorb metal ions for a bioinspired synthesis of carbonaceous material doped by selected transition metals. As an all-around metal accumulator, Hebeloma mesophaeum was selected, and it was cultivated in the presence of three transition-metal ions: Ni^II, Fe^II, and Mn^II. The metal-doped carbonized biomaterial possessed enhanced catalytic activity toward hydrazine oxidation, oxygen reduction, and cumene hydroperoxide reduction. Thus, we have shown possible transformation of a waste product (fungi grown on a contaminated soil) into a value-added carbonaceous material with tailored catalytic properties. This bioinspired synthesis can outline an attractive route for the fabrication of catalysts for important industrial applications on a large scale.     

Characterization of multi-cationic aminopyrene-based tag for oligosaccharide labeling by capillary electrophoresis with laser-induced fluorescence detection

In this work, we characterize a previously synthesized multi-cationic aminopyrene-based labeling tag for oligosaccharide analysis by capillary electrophoresis with laser-induced fluorescence detection (CE/LIF). The fluorescent tag, 4,4',4''-(8-aminopyrene-1,3,6-trisulfonyl)tris(1-methylpiperazine) (APTMP), was characterized by reaction with standard maltooligosaccharides and the labeling parameters such as fluorescent tag concentration, labeling temperature, and time as well as influence of a reducing agent and its solvent were investigated in terms of labeling efficiency. The nanomolar limit of detection of CE/LIF analysis of APTMP labeled maltopentaose was determined. However, significant amount of the oligosaccharides was reduced to alditols, which negatively affects the yield and rate of the labeling reaction. Under optimized conditions, a highly reproducible labeling by multi-cationic APTMP was obtained; however, the most commonly used labeling by multi-anionic 8-aminopyrene-1,3,6-trisulfonic acid trisodium salt (APTS) is superior compared to APTMP labeling. Lower reactivity of APTMP compared to APTS can be explained by the loss of nucleophilicity induced by substitution of the sulfonate groups with more electron-withdrawing aminosulfonyl ones. On contrary, APTMP is still a promising tag for oligosaccharide labeling followed by CE-MS in a positive ion mode, which is considered to be more sensitive than MS detection of APTS in a negative ion mode.