Mechanistic aspects of the interaction of intercalating metal complexes with nucleic acids

Since the discovery of the intercalative binding mode, almost half a century ago, intense efforts have been devoted to design, synthesize and test new small molecules that can bind nucleic acids with improved recognition and affinity. Among them, metal bearing compounds play a principal role. Despite the plethora of different metal complexes which have been designed to react with DNA and which have been tested, the binding mechanisms have often not been analysed. This is unfortunate, considering the importance of understanding of the binding features in depth in order to optimise their biological effects. This review covers articles where an analysis of the kinetic aspects of the interaction between the target metal compound and nucleic acids has been carried out and details of the reaction mechanism are provided. Flat metal complexes (porphyrins), spherical complexes with protruding intercalating residues, azamacrocycle metallo-intercalators and intercalators with metal bearing pendant arms are the classes of molecules that have been taken into account. The limits of the SDS method, employed to measure the rates of drug dissociation from polynucleotides, are also discussed.     

Photoionization Detector for Portable Rapid GC

With the development of portable rapid gas chromatography (GC) for environmental monitoring the photoionization detector (PID) has potential application. The frequent calibration required and the relatively large dead volume have limited the use of the PID, however. An improved PID which resolves these problems is proposed in this paper. Compared with a commercial instrument, signal generation, the main aspect of the improved PID, has also been optimized. In the improved PID the sample is directed to flow across the lamp window, rather than toward the lamp, and a new, simple automatic self-cleaning technique, which effectively eliminates contaminants and substantially reduces drift, has also been adopted. Use of new electrodes has effectively reduced the background noise and dead volume of the PID. As a result of this new design the PID should be more compatible with rapid portable GC in environmental monitoring, because of elimination of most of the tedious cleaning and calibration previously necessary.     

Computer-assisted multifactor optimization of selectivity in gas chromatography

Summary A computer-assisted method is presented for the simultaneous multifactor optimization (stationary phase loading, column temperature and carrier gas flow rate) of the analytical conditions for the optimum separation of multicomponent samples in gas chromatography. The optimization of the separation over the experimental region is based on a special polynomial from twelve preliminary experiments using the resolution as the selection criterion. Computer scanning technique was used for optimum selection in three dimensions. Excellent agreement was obtained between the predicted data and the experimental results.     

Integral equations for the dynamics of Anderson's magnetic impurity model

Integral equations for the Anderson model at finiteU and arbitrary degeneracyN are set up, which may be viewed as a generalization of the non-crossing approximation in the infiniteU case. In the Kondo (or heavy fermion) limit an analytic treatment is possible near the threshold, where the system is difficult to analyze numerically. Threshold exponents follow from a quartic equation.     

Deflagration to detonation transition in fast flames and tracking with chemical explosive mode analysis

In the context of vapour cloud explosion, the flame acceleration process can lead to conditions promoting deflagration to detonation transition (DDT), potentially leading to increased damages in accidental scenarios. This study focuses on this phenomenon by performing simulations of detonation reinitiation for fast flames in the Chapman–Jouguet deflagration regime. It is obtained experimentally by the attenuation of an incident detonation by an array of obstacles. A primary objective of the paper is to demonstrate the ability of the numerical model to reproduce the major experimental trends, namely the variation of the reinitiation propensity for different initial pressures and blockage ratios (BRs). Chemical explosive mode analysis (CEMA) is also adapted to the context of this study, in order to identify locally the propagation regime and to provide insights on the reinitiation mechanism. An a priori validation of the CEMA methodology is first performed on relevant canonical one-dimensional configurations. Subsequently, ensembles of five realizations are computed at different initial pressures and BRs and compared to experimental data. They are shown to reproduce the major observed trends in terms of detonation reinitiation length with respect to the operating conditions, with significant variability from one realization to another. In addition, the reinitiation mechanism is also found to be consistent with experimental observations and a previous numerical study of the same configuration. The CEMA methodology adapted to this context is able to identify locally the different propagation regimes, and to track the highly reactive zones that coherently couple with transverse pressure perturbations, leading to the formation of a strongly reacting kernel which eventually triggers the detonation reinitiation.     

Green solid-phase peptide synthesis 4. γ-Valerolactone and N-formylmorpholine as green solvents for solid phase peptide synthesis

Herein, we report the use of γ-valerolactone (GVL) and N-formylmorpholine (NFM) as DMF substitutes in polystyrene based SPPS. The solubility of selected amino acids and coupling reagents were studied in GVL and NFM, followed by their use in the successful synthesis of Aib-enkephalin pentapeptide (H-Tyr-Aib-Aib-Phe-Leu-NH₂) and Aib-ACP decapeptide (H-Val-Gln-Aib-Aib-Ile-Asp-Tyr-Ile-Asn-Gly-NH₂).     

Instrumental neutron activation analysis (INAA) of Nok sculptures in I. P. Stanback Museum

Biochar prepared from Triticum aestivum straw (SB) was used to investigate the sorption separation of Cd²⁺ and Co²⁺ ions in single and binary systems. The maximum adsorption capacity of SB was higher for Cd²⁺ ions and the process was strongly pH dependent. Adsorption data in the binary system Cd²⁺–Co²⁺ were well described by the extended Langmuir model and the values of affinity parameter b indicate a higher affinity of SB to Cd²⁺ in comparison with Co²⁺ ions. The mechanisms for the removal of Cd and Co by biochar were evidenced by the different instrumental analyses as well as by chemical speciation modeling. Elemental mapping of SB revealed spatial distributions of cobalt and cadmium on biochar surfaces. The role of functional groups in metal sorption was confirmed by FTIR. Results demonstrate that SB is a promising heavy metal-immobilizing agent for contaminated soils or water.     

Effects of outflow boundary condition on convective heat transfer with strong recirculating flow

Three practices of treating outflow boundary condition were adopted in computations for convective heat transfer of a two-dimensional jet impinging in a rectangular cavity. The three practices were local mass conservation method, local one-way method and fully developed assumption. The numerical solutions of the three methods were compared with test data obtained via, naphthalene sublimation technique. It was found that the fully developed assumption was inappropriate, and the local one-way method could provide reasonably good results for the cavity bottom, while for the lateral wall the results with this method qualitatively differed from the test data. The solution with the local mass conservation method was the best. It thus suggested that for a problem expected with a strong recirculating flow at the exit of the computation domain, the local mass conservation method be adopted to treat the outflow boundary condition.