Photochemistry and vibrational spectra of matrix-isolated methyl 4-chloro-5-phenylisoxazole-3-carboxylate

Methyl 4-chloro-5-phenylisoxazole-3-carboxylate (MCPIC) has been synthesized, isolated in low temperature argon and xenon matrices, and studied by FTIR spectroscopy. The characterization of the low energy conformers of MCPIC was made by undertaking a systematic investigation of the DFT(B3LYP)/6-311++G(d,p) potential energy surface of the molecule. The theoretical calculations predicted the existence of three low energy conformers. Two of them (I and II) were observed experimentally in the cryogenic matrices. The third one (III) was found to be converted into conformer II during deposition of the matrices, a result that is in agreement with the predicted low III → II energy barrier (<0.3 kJ mol(-1)). In situ UV irradiation (λ > 235 nm) of matrix-isolated MCPIC yielded as final photoproduct the corresponding oxazole (methyl 4-chloro-5-phenyl-1,3-oxazole-2-carboxylate). Identification of the azirine and nitrile-ylide intermediates in the spectra of the irradiated matrices confirmed their mechanistic relevance in the isoxazole → oxazole photoisomerization.     

Partial least squares model and design of experiments toward the analysis of the metabolome of Jatropha gossypifolia leaves: Extraction and chromatographic fingerprint optimization

A major challenge in metabolomic studies is how to extract and analyze an entire metabolome. So far, no single method was able to clearly complete this task in an efficient and reproducible way. In this work we proposed a sequential strategy for the extraction and chromatographic separation of metabolites from leaves Jatropha gossypifolia using a design of experiments and partial least square model. The effect of 14 different solvents on extraction process was evaluated and an optimized separation condition on liquid chromatography was estimated considering mobile phase composition and analysis time. The initial conditions of extraction using methanol and separation in 30 min between 5 and 100% water/methanol (1:1 v/v) with 0.1% of acetic acid, 20 μL sample volume, 3.0 mL min^?1 flow rate and 25°C column temperature led to 107 chromatographic peaks. After the optimization strategy using i‐propanol/chloroform (1:1 v/v) for extraction, linear gradient elution of 60 min between 5 and 100% water/(acetonitrile/methanol 68:32 v/v with 0.1% of acetic acid), 30 μL sample volume, 2.0 mL min^?1 flow rate, and 30°C column temperature, we detected 140 chromatographic peaks, 30.84% more peaks compared to initial method. This is a reliable strategy using a limited number of experiments for metabolomics protocols.     

Steady-state and time-resolved investigations of a crown thioether conjugated with methylacridinium and its complexes with metal ions

The crown thioether 9-[4-(4,7,10,13-tetrathia-1-azacyclopentadecyl]phenyl-N-methylacridinium perchlorate (TCMA) was synthesized and characterized with the aim to verify its ability to interact selectively with metal ions and substantiate the possibility to detect easily the presence of heavy metals in fluid samples. The spectroscopic properties of TCMA, alone and in the presence of metal ions, were therefore studied in polar solvents (MeCN and H(2)O); in particular, steady-state UV-Vis spectrophotometric and fluorimetric techniques were used together with transient absorption spectroscopy with fs time resolution to investigate the spectral and dynamic properties of the lowest excited singlet state of TCMA and of TCMA/metal ion complexes. The absorption in the Vis region is characterized by a charge-transfer nature with the methylacridinium moiety acting as the electron-acceptor and the anilic group as the electron-donor. No emission from the S(1) was detected both in MeCN and H(2)O, while a small S(2)→ S(0) fluorescence emission (λ(max) = 485 nm and ?(F) = 0.0011) was detected in water. Time-resolved measurements with fs resolution of TCMA in MeCN have shown that the relaxed S(1) state is reached ～0.6 ps after the laser pulse, while the S(1)→ S(0) time constant is 3.7 ps. Among the investigated metal ions, only Fe(3+) (in MeCN) and Hg(2+) (in MeCN and H(2)O) were able to form stable complexes (association constant, K(ass) = 1-11 × 10(4) M(-1)) with TCMA. The S(1) state of the TCMA/M(n+) complexes emits with low quantum yield (?(F) = 0.0023-0.014) and decays with time constants much longer than TCMA itself, at least in the case of TCMA/Hg(2+) in MeCN. This study showed that TCMA is a good candidate for colorimetric/fluorimetric sensing of Hg(2+) in aqueous media owing to its high selectivity towards metal ions.     

Coupling of an indicator-free electrochemical DNA biosensor with polymerase chain reaction for the detection of DNA sequences related to the apolipoprotein E

This paper describes a disposable indicator-free electrochemical DNA biosensor applied to the detection of apolipoprotein E (apoE) sequences in PCR samples. In the indicator-free assays, the duplex formation was detected by measuring the electrochemical signal of the guanine base of nucleic acids. The biosensor format involved the immobilisation of an inosine-modified (guanine-free) probe onto a screen-printed electrode (SPE) transducer and the detection of the duplex formation in connection with the square-wave voltammetric measurement of the oxidation peak of the guanine of the target sequence.The indicator-free scheme has been characterised using 23-mer oligonucleotides as model: parameters affecting the hybridisation assay such as probe immobilisation conditions, hybridisation time, use of hybridisation accelerators were examined and optimised.The analysis of PCR samples (244 bp DNA fragments, obtained by amplification of DNA extracted from human blood) required a further optimisation of the experimental procedure. In particular, a lower steric hyndrance of the probe modified surface was essential to allow an efficient hybridisation of the target DNA fragment. Negative controls have been performed using the PCR blank and amplicons unrelated to the immobilised probe. A 10 min hybridisation time allowed a full characterisation of each sample.     

Photoinduced Water Oxidation in Chitosan Nanostructures Containing Covalently Linked RuII Chromophores and Encapsulated Iridium Oxide Nanoparticles

The luminophore Ru(bpy)₂(dcbpy)²⁺ (bpy=2,2’-bipyridine; dcbpy=4,4’-dicarboxy-2,2’-bipyridine) is covalently linked to a chitosan polymer; crosslinking by tripolyphosphate produced Ru-decorated chitosan fibers (NS-RuCh), with a 20 : 1 ratio between chitosan repeating units and Ru^II chromophores. The properties of the Ru^II compound are unperturbed by the chitosan structure, with NS-RuCh exhibiting the typical metal-to-ligand charge-transfer (MLCT) absorption and emission bands of Ru^II complexes. When crosslinks are made in the presence of IrO₂ nanoparticles, such species are encapsulated within the nanofibers, thus generating the IrO₂⊂NS-RuCh system, in which both Ru^II photosensitizers and IrO₂ water oxidation catalysts are within the nanofiber structures. NS-RuCh and IrO₂⊂NS-RuCh have been characterized by dynamic light scattering, scanning electronic microscopy, and energy-dispersive X-ray analysis, which indicated a 2 : 1 ratio between Ru^II chromophores and IrO₂ species. Photochemical water oxidation has been investigated by using IrO₂⊂NS-RuCh as the chromophore/catalyst assembly and persulfate anions as the sacrificial species: photochemical water oxidation yields O₂ with a quantum yield (Φ) of 0.21, definitely higher than the Φ obtained with a similar solution containing separated Ru(bpy)₃²⁺ and IrO₂ nanoparticles (0.05) or with respect to that obtained when using NS-RuCh and “free” IrO₂ nanoparticles (0.10). A fast hole-scavenging process (rate constant, 7×10⁴ s⁻¹) involving the oxidized photosensitizer and the IrO₂ catalyst within the IrO₂⊂NS-RuCh system is behind the improved photochemical quantum yield of IrO₂⊂NS-RuCh.     

Posture as a chaotic system and an application to the Parkinson’s disease

In this work we investigate and compare a number of time series of stabilograms of healthy subjects and Parkinsonians. This is carried out by means of the chaos paradigm through the preliminary computation of the first minimum of the mutual information function and the embedding dimension (using false nearest neighbours) in order to obtain the correlation dimension as well as the largest Lyapunov exponent. We show that the postural act is indeed chaotic and especially that the latter two parameters do not allow to discriminate healthy subjects from parkinsonians. Moreover we report a discrepancy of our values with those found in previous works.     

1,4-Benzothiazine-2-carboxylic acid 1-oxides as analogues of antibacterial quinolones

The synthesis of 1,4-benzothiazine-2-carboxylic acid 1-oxides as agents which mimic quinolone antibacterial, are described. The key step includes intramolecular cyclization of phenylsulfinyl acrylates 17 and 18 which are prepared in six steps from 11. None of new target compounds showed interesting antibacterial activity in vitro against the tested strains.     

Chemical information from the source function

The source function, which enables one to equate the value of the electron density at any point within a molecule to a sum of atomic contributions, has been applied to a number of cases. The source function is a model-independent, quantitative measure of the relative importance of an atom's or group's contribution to the density at any point in a system, and it represents a potentially interesting tool to provide chemical information. It is shown that the source contribution from H to the electron density rho(b) at the bond critical point in HX diatomics decreases with increasing X's electronegativity, and that this decrease is a result of significant changes in the Laplacian distribution within the H-basin. It is also demonstrated that the source function from Li to rho(b) in LiX diatomics is a more sensitive index of atomic transferability than it is the lithium atomic energy or population. The observed changes are such as to ensure a constant percentage source contribution from Li to rho(b) throughout the LiX series, rather than a constant source as one would expect in the limit of perfect atomic transferability. Application of the source function to planar lithium clusters has revealed that the source function clearly discriminates between a nonnuclear electron density maximum and a maximum associated to a nucleus, on the basis of the relative weight of the source contributions from the basin associated to the maximum and from the remaining basins in the cluster. The source function has also allowed for a classification of hydrogen bonds in terms of characteristic source contributions to the density at the H-bond critical point from the H involved in the H-bond, the H-donor D, and the H-acceptor A. The source contribution from the H appears as the most distinctive marker of the H-bond strength, being highly negative for isolated H-bonds, slightly negative for polarized assisted H-bonds, close to zero for resonance-assisted H-bonds, and largely positive for charge-assisted H-bonds. The contributions from atoms other than H, D, and A strongly increase with decreasing H-bond strength, consistently with the parallel increased electrostatic character of the interaction. The correspondence between the classification provided by the Electron Localization Function topologic approach and by the source function has been highlighted. It is concluded that the source function represents a practical tool to disclose the local and nonlocal character of the electron density distributions and to quantify such a locality and nonlocality in terms of a physically sound and appealing chemical partitioning.     

Binding of gaseous Fe(III)-heme cation to model biological molecules: Direct association and ligand transfer reactions

The binding of a variety of ligands with Fe(III)-heme(+) ion, prosthetic group of heme proteins, has been studied in the gas phase by ESI-FT-ICR mass spectrometry. The ligands have been selected among substrate molecules of heme proteins (e.g., NO, nitroso compounds) or among model compounds acting for the functional groups that are present in the protein backbone (e.g., amines, thioethers, nitriles, ketones, amides, etc.). Both the kinetic and the thermodynamic features of the addition reactions are reported. Fe(III)-heme(+) ions react faster with lone pair donor ligands as the reaction becomes increasingly thermodynamically favored (higher heme cation basicity of the ligand, HCB, namely -DeltaG degrees for the ligand addition reaction). In turn HCBs correlate in general with the gas phase basicity toward the proton of the various ligands. A ligand addition equilibrium is established with weaker ligands, methanol, acetonitrile and acetone, yielding absolute HCB values, whereas ligand transfer equilibriums allowed a scale of relative (and absolute) HCBs to be constructed. NO displays exceptional binding properties towards Fe(III)-heme(+), unrelated to the low gas phase basicity toward the proton of this molecule, which is clearly the basis for the paramount role of heme proteins in NO binding and regulation.