Interactions between a dsDNA Oligonucleotide and Imidazolium Chloride Ionic Liquids: Effect of Alkyl Chain Length,Part I

Ionic liquids (ILs) have become nearly ubiquitous solvents and their interactions with biomolecules has been a focus of study. Here, we used the fluorescence emission of DAPI, a groove binding fluorophore, coupled with molecular dynamics (MD) simulations to report on interactions between imidazolium chloride ([Im_n,1]⁺) ionic liquids and a synthetic DNA oligonucleotide composed entirely of T/A bases (7(TA)) to elucidate the effects ILs on a model DNA duplex. Spectral shifts on the order of 500–1000 cm⁻¹, spectral broadening (~1000 cm⁻¹), and excitation and emission intensity ratio changes combine to give evidence of an increased DAPI environment heterogeneity on added IL. Fluorescence lifetimes for DAPI/IL solutions yielded two time constants 0.15 ns (~80% to 60% contribution) and 2.36–2.71 ns for IL up to 250 mM. With DNA, three time constants were required that varied with added IL (0.33–0.15 ns (1–58% contribution), ~1.7–1.0 ns (~5% contribution), and 3.8–3.6 ns (94–39% contribution)). MD radial distribution functions revealed that π-π stacking interactions between the imidazolium ring were dominant at lower IL concentration and that electrostatic and hydrophobic interactions become more prominent as IL concentration increased. Alkyl chain alignment with DNA and IL-IL interactions also varied with IL. Collectively, our data showed that, at low IL concentration, IL was primarily bound to the DNA minor groove and with increased IL concentration the phosphate regions and major groove binding sites were also important contributors to the complete set of IL-DNA duplex interactions.     

Surface Interaction of Ionic Liquids: Stabilization of Polyethylene Terephthalate-Degrading Enzymes in Solution

The effect of aqueous solutions of selected ionic liquids solutions on Ideonella sakaiensis PETase with bis(2-hydroxyethyl) terephthalate (BHET) substrate were studied by means of molecular dynamics simulations in order to identify the possible effect of ionic liquids on the structure and dynamics of enzymatic Polyethylene terephthalate (PET) hydrolysis. The use of specific ionic liquids can potentially enhance the enzymatic hydrolyses of PET where these ionic liquids are known to partially dissolve PET. The aqueous solution of cholinium phosphate were found to have the smallest effect of the structure of PETase, and its interaction with (BHET) as substrate was comparable to that with the pure water. Thus, the cholinium phosphate was identified as possible candidate as ionic liquid co-solvent to study the enzymatic hydrolyses of PET.     

Optimization of isothermal batchwise bulk free radical polymerization with and without chain transfer agent for minimum reaction time

In this work the minimum reaction time was studied for a specific final monomer conversion and number-average chain length by adjusting the amount of initial initiator concentration in the presence of a fixed amount of chain transfer agent at the best isothermal temperature. A new method for the determination of the best initial initiator concentration ([I]₀) and isothermal temperature (T) in the presence of chain transfer agent was developed by the application of a simple optimization algorithm, based on the Lagrangian multiplier, to the basic free radical kinetics. Numerical examples for the polymerization of styrene are presented. It is shown that in the presence of a fixed amount of chain transfer agent the best isothermal policy for minimum time would deviate from dead-end polymerization. As the concentration of chain transfer agent increases, a stronger deviation from dead-end polymerization is observed. It was found that for a given pair of desired conversion and number-average chain length the usage of a chain transfer agent would result in a longer reaction time. The results give insights into operation of batchwise bulk free radical polymerization for minimum reaction time under isothermal conditions.     

Uncommon Terpenoids from Salvia Species: Chemistry,Biosynthesis and Biological Activities

The search for new bioactive compounds from plant sources has been and continues to be one of the most important fields of research in drug discovery. However, Natural Products research has continuously evolved, and more and more has gained a multidisciplinary character. Despite new developments of methodologies and concepts, one intriguing aspect still persists, i.e., different species belonging to the same genus can produce different secondary metabolites, whereas taxonomically different genera can produce the same compounds. The genus Salvia L. (Family Lamiaceae) comprises myriad distinct medicinal herbs used in traditional medicine worldwide that show different pharmacological activities due to the presence of a variety of interesting specialized metabolites, including mono-, sesqui-, di-, sester-, tri-, tetra-, and higher terpenoids as well as phenylpropanoids, phenolic acid derivatives, lignans, flavonoids, and alkaloids. We herein summarize the research progress on some uncommon terpenoids, isolated from members of the genus Salvia, which are well recognized for their potential pharmacological activities. This review also provides a current knowledge on the biosynthesis and occurrence of some interesting phytochemicals from Salvia species, viz. C₂₃-terpenoids, sesterterpenoids (C₂₅), dammarane triterpenoids (C₃₀), and uncommon triterpenoids (C₂₀+C₁₀). The study was carried out by searching various scientific databases, including Elsevier, ACS publications, Taylor and Francis, Wiley Online Library, MDPI, Springer, Thieme, and ProQuest. Therefore, 106 uncommon terpenoids were identified and summarized. Some of these compounds possessed a variety of pharmacological properties, such as antibacterial, antiviral, antiparasitic, cytotoxic and tubulin tyrosine ligase inhibitory activities. Due to the lack of pharmacological information for the presented compounds gathered from previous studies, biological investigation of these compounds should be reinvestigated.     

Observation of chimera patterns in a network of symmetric chaotic finance systems

The economic and financial systems consist of many nonlinear factors that make them behave as the complex systems. Recently many chaotic finance systems have been proposed to study the complex dynamics of finance as a noticeable problem in economics. In fact, the intricate structure between financial institutions can be obtained by using a network of financial systems. Therefore, in this paper, we consider a ring network of coupled symmetric chaotic finance systems, and investigate its behavior by varying the coupling parameters. The results show that the coupling strength and range have significant effects on the behavior of the coupled systems, and various patterns such as the chimera and multi-chimera states are observed. Furthermore, changing the parameters' values, remarkably influences on the oscillators attractors. When several synchronous clusters are formed, the attractors of the synchronized oscillators are symmetric, but different from the single oscillator attractor.     

Warm tachyon inflation and swampland criteria

In this study, the scenario of a two-component warm tachyon inflation is considered, where the tachyon field plays the role of the inflaton by driving the inflation. During inflation, the tachyon scalar field interacts with the other component of the Universe, which is assumed to be photon gas, i.e., radiation. The interacting term contains a dissipation coefficient, and the study is modeled based on two different and familiar choices of the coefficient that were studied in the literature. By employing the latest observational data, the acceptable ranges for the free parameters of the model are obtained. For any choice within the estimated ranges, there is an acceptable concordance between the theoretical predictions and observations. Although the model is established based on several assumptions, it is crucial to verify their validity for the obtained values of the free parameters of the model. It is found that the model is not self-consistent for all values of the ranges, and for some cases, the assumptions are violated. Therefore, to achieve both self-consistency and agreement with the data, the parameters of the model must be constrained. Subsequently, we consider the recently proposed swampland conjecture, which imposes two conditions on the inflationary models. These criteria rule out some inflationary models; however, warm inflation is among those that successfully satisfy the swampland criteria. We conduct a precise investigation, which indicates that the proposed warm tachyon inflation cannot satisfy the swampland criteria for some cases. In fact, for the first case of the dissipation coefficient, in which, there is dependency only on the scalar field, the model agrees with observational data. However, it is in direct tension with the swampland criteria. Nevertheless, for the second case, wherein the dissipation coefficient has a dependency on both the scalar field and temperature, the model exhibits acceptable agreement with observational data, and suitably satisfies the swampland criteria.     

Dynamical behavior and network analysis of an extended Hindmarsh–Rose neuron model

Nonlinear Dynamics - In this paper, the extended Hindmarsh–Rose neuron model, which considers the slow intracellular exchange of calcium ions between its store and the cytoplasm, is studied....     

Quantitative Analysis of Holmium Ion by a Ho3+ Ion‐Selective Sensor Based on a Symmetric Thio‐Schiff's Base

A poly(vinyl chloride) (PVC) membrane sensor for holmium ions was fabricated based on N‐[(Z)‐1‐(2‐thienyl)‐ methylidene]‐N‐[4‐(4‐{[(Z)‐1‐(2‐thienyl)methylidene]amino} phenoxy)phenyl] amine (TPA) as a new ion carrier, acetophenon (AP) as plasticizing solvent mediator and sodium tetraphenyl borate (NaTPB) as an anion excluder. The electrode shows a good selectivity towards Ho³⁺ ions respect to other inorganic cations, including alkali, alkaline earth, transition and heavy metal ions. The constructed sensor displays a Nernstian behavior (19.5±0.3 mV/decade) over the concentration range of 1.0×10⁻⁶ to 1.0×10⁻² mol·L⁻¹ with the detection limit of the electrode being 4.6×10⁻⁷ mol·L⁻¹ and very short response time (ca. 5 s). It has a useful working pH range of 3.2–9.8 for at least 8 weeks. The electrode was successfully applied as an indicator electrode for the potentiometric titration of a Ho³⁺ solution with EDTA and holmium determination in some alloys. The proposed sensor accuracy was studied by the determination of Ho³⁺ in mixtures of three different ions.     

Magnetic solid-phase extraction using Schiff base ligand supported on magnetic nanoparticles as sorbent combined with dispersive liquid-liquid microextraction for the extraction of phenols from water samples

ABSTRACT

In this work, the magnetic sorbent was developed by covalent binding of a Schiff base ligand, N,N’-bis(3-salicyliden aminopropyl)amine (salpr), on the surface of silica coated magnetic nanoparticles (Salpr@SCMNPs). The core-shell nanoparticle was applied for the magnetic solid-phase extraction (MSPE) combined with dispersive liquid-liquid microextraction (DLLME) of phenolic compounds from water samples prior to gas chromatography-flame ionisation detector (GC?FID). Characterisation of the Salpr@SCMNPs was performed with different physicochemical methods such as Fourier transform infrared (FT-IR), scanning electron microscopy (SEM) and vibrating sample magnetometer (VSM). Variables affecting the performance of both extraction steps such as pH of the water sample, the sorbent amount, the desorption conditions, the extraction time; and extraction solvent were studied. Under the optimised conditions, the analytical performances were determined with a linear range of 0.01–100 ng mL^?1 and a limit of detection at 0.003–0.02 ng mL^?1 for all of the analytes studied. The intra-day (n = 5) and inter-day (n = 3) relative standard deviations (RSD%) of three replicates were each demonstrated in the range of 6.9–8.9% and 7.3–10.1%, respectively. The proposed method was executed for the analysis of real water samples, whereby recoveries in the range of 92.9–99.0% and RSD% lower than 6.1% were attained.     

Synthesis and characterization of a novel terpolymer based on L‐lactide,glycolide, and trimethylene carbonate for specific medical applications

The bioresorbable new terpolymers of L ‐lactide, glycolide, and trimethylene carbonate were synthesized via ring‐opening polymerization reaction of the cyclic monomers using Stannous octoate as initiator. Glycolide and L ‐lactide were prepared from their parent acids and then purified by multiple re‐crystallization from ethyl acetate. The thermal and mechanical properties of this polymer were characterized by means of thermogravimetry, differential scanning calorimetry, stress–strain measurements, and dynamic mechanical analysis. The glass transition temperature of the terpolymers changed from 33 to 51°C with composition in a predictable manner. The rheological properties of copolymers and molecular weight of each copolymer were determined showing good processability for making fibers. Using a mini‐extruder, it was possible to produce some filaments. The filaments produced at 140°C had appropriate ductility. The in vitro measurements, specifying the biological properties were also carried out. The sample with monomer composition LLA:GA:TMC = 60:34:6 showed a slower degradation rate than the one with LLA:GA:TMC = 54:34:12. The low‐toxicity bioresorbable terpolymers with good rheological and in vitro properties are the promising new materials for biomedical applications specially a new suture formulation. Copyright © 2011 John Wiley & Sons, Ltd.