Precise mass measurement of a double-stranded 500 base-pair (309 kDa) polymerase chain reaction product by negative ion electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry

Electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICRMS) has been used to determine the mass of a double-stranded 500 base-pair (bp) polymerase chain reaction (PCR) product with an average theoretical mass of the blunt-ended (i.e. unadenylated) species of 308 859.35 Da. The PCR product was generated from the linearized bacteriophage Lambda genome which is a double-stranded template. Utilization of ethanol precipitation in tandem with a rapid microdialysis step to purify and desalt the PCR product was crucial to obtain a precise mass measurement. The PCR product (0.8 pmol/μL) was electrosprayed from a solution containing 75% acetonitrile, 25 mM piperidine, and 25 mM imidazole and was infused at a rate of 200 nL/min. The average molecular mass and the corresponding precision were determined using the charge-states ranging from 172 to 235 net negative charges. The experimental mass and corresponding precision (reported as the 95% confidence interval of the mean) was 309 406 +/- 27 Da (87 ppm). The mass accuracy was compromised due to the fact that the PCR generates multiple products when using Taq polymerase due to the non-template directed 3'-adenylation. This results in a mixture of three PCR products with nearly identical mass (i.e. blunt-ended, mono-adenylated and di-adenylated) with unknown relative abundances that were not resolved in the spectrum. Thus, the experimental mass will be a weighted average of the three species which, under our experimental conditions, reflects a nearly equal concentration of the mono- and di-adenylated species. This report demonstrates that precise mass measurements of PCR products up to 309 kDa (500 bp) can be routinely obtained by ESI-FTICR requiring low femtomole amounts. Copyright 1999 John Wiley & Sons, Ltd.     

Implications of heterogeneous bead behavior on cell mechanical properties measured with magnetic twisting cytometry

Magnetic twisting cytometry (MTC) measures cellular mechanical properties, such as cell stiffness and viscosity, by applying mechanical stress to specific cell surface receptors via ligand-coated ferromagnetic beads. MTC measures simultaneously the rotation of approximately 50,000 beads attached to 20,000 - 40,000 cells. Here we show direct evidence of heterogeneous bead behavior and examine its consequences in the interpretation of cell mechanical properties.     

Ciliation and lamellae in crystalline polymers

Molecular cilia, the uncrystallized portions of chains already partly attached to polymer crystals, exert a profound influence on the course of polymeric crystallization with ultimate responsibility for the divergence of adjacent lamellae which leads to spherulitic growth. Their effective size and pressure have been measured, in α-polypropylene, from electron microscopic measurements of the separation and maximum curvature of lamellae in row structures. That cilia exist and extend the effective region occupied by a lamella beyond the geometrical confines of its fold surfaces is important for crystallization theory and may well have implications for the connection of lamellae into networks and for gelation.     

Immobilization and Continuous Recycling of Photoredox Catalysts in Ionic Liquids for Applications in Batch Reactions and Flow Systems: Catalytic Alkene Isomerization by Using Visible Light

A catalytic (E)‐ to (Z)‐isomerization of olefins using a photoredox catalyst under mild reaction conditions is presented. A variety of (Z)‐alkenes can be prepared in the presence of visible light. A new reaction system allows an easy and efficient scale‐up, as well as a continuous flow process in which the photocatalyst is immobilized in an ionic liquid and continuously recycled by simple phase separation.     

Analysis of organic contaminants on Si wafers with TXRF-NEXAFS

Organic contamination is starting to play an important role in the production and quality control of Si wafers. For the traceability of the source of contamination, information on the chemical binding conditions is very valuable. A near edge X-ray absorption fine structure (NEXAFS) investigation is the natural development of total reflection X-ray fluorescence (TXRF) analysis of the wafer surfaces able to solve the problem of speciation. The plane grating monochromator beamline for undulator radiation of the Physikalisch-Technische Bundesanstalt at the electron storage ring BESSY II, which provides photon energies between 30 eV and 1.9 keV for the specimen excitation, is an ideal excitation source for TXRF-NEXAFS experiments that require a high resolving power and a sufficient photon flux for trace analysis of low Z elements. The contaminants have been diluted and deposited as droplets on wafer pieces thoroughly cleaned after the cutting. The K edges of C, N, O have been examined. Some discrepancies have been found in the analysis of the same compounds in two different beamtimes; molecular orientation is pointed to as the cause for the difference in magnitude of the resonances. The unintentional contamination has been identified as mainly composed of aliphatic chains.     

Influence of the Electromagnetic Forces on Momentum and Heat Transfer in a 3-Phase ac Plasma Reactor

A new 3-phase ac plasma reactor has been developed within the framework of research on hydrocarbon cracking for the production of carbon black and hydrogen. ^(1,2) One of the main characteristics of the system is related to the 3-phase, 50 Hz ac current plasma generator which induces a very particular arc motion affecting the heat and mass transfer inside the reactor. In a first step, the general flow inside the reactor in the absence of hydrocarbon injection has been studied. A simplified approach to characterize the heat and mass transfer inside the reactor is presented in this paper. The arc zone analysis is carried out simultaneously by a theoretical analysis of the electromagnetic forces and by an ultrahigh-speed cine-camera analysis. The flow in the reactor is modeled with a CFD commercial code. Results are compared with experimental temperature measurements.     

Radiochemical neutron activation analysis of chromium in biological materials using ion chromatography with “on-line” yield determination

The use of ion chromatography with continuous UV detection for radiochemical separation of Cr with simultaneous yield determination is presented. The RNAA method consists of sample destruction in HNO₃+HClO₄, extraction of Cr(VI) with tribenzylamine in CHCl₃, backextraction in NaOH and chromatography of chromate. From radiotracer experiments, the ratio of signals for⁵¹Cr and Cr spike was found to be constant for a chromium mass range of 15 to 100 g. Application of the RNAA method to Cr determination in biological reference materials showed a reasonable agreement with the reference values. A relative standard deviation of 3% on the 100 g/kg level for homogeneous material was achieved.IAEA-fellow, on leave from the Philippine Nuclear Research Institute Philippine     

Bifurcations from infinity in asymmetric nonlinear oscillators

We study the existence of large-amplitude periodic or almost periodic solutions of second order differential equations with asymmetric nonlinearities, when the system is close to "nonlinear resonance". Received September 1998