Rogioldiol A,a new obtusane diterpene,and rogiolal,a degraded derivative,of the red seaweed Laurencia microcladia from II rogiolo along the coast of tuscany: A Synergism in Structural Elucidation

The structure of rogioldiol A ((?)- 1 ), isolated from the red seaweed Laurencia microcladia, was determined. Employing the exciton-coupling technique for rogioldiol A p-bromobenzoate ( 2 ), the absolute configuration at C(9) of (?)- 1 was assigned, and, together with extensive NMR experiments, the absolute configuration at C(10) and preferred conformations of (?)- 1 were determined. The absolute configuration of the hetero-substituted cyclohexane ring was deduced in analogy from the X-ray structure of 4 , a derivative of the aldehyde 3 , which was isolated from the same seaweed and is believed to be a degradation product of (?)- 1 .     

Redox-controllable amphiphilic [2]rotaxanes

With the fabrication of molecular electronic devices (MEDs) and the construction of nanoelectromechanical systems (NEMSs) as incentives, two constitutionally isomeric, redox-controllable [2]rotaxanes have been synthesized and characterized in solution. Therein, they both behave as near-perfect molecular switches, that is, to all intents and purposes, these two rotaxanes can be switched precisely by applying appropriate redox stimuli between two distinct chemomechanical states. Their dumbbell-shaped components are composed of polyether chains interrupted along their lengths by i) two pi-electron rich recognition sites-a tetrathiafulvalene (TTF) unit and a 1,5-dioxynaphthalene (DNP) moiety-with ii) a rigid terphenylene spacer placed between the two recognition sites, and then terminated by iii) a hydrophobic tetraarylmethane stopper at one end and a hydrophilic dendritic stopper at the other end of the dumbbells, thus conferring amphiphilicity upon these molecules. A template-directed protocol produces a means to introduce the tetracationic cyclophane, cyclobis(paraquat-p-phenylene) (CBPQT(4+)), which contains two pi-electron accepting bipyridinium units, mechanically interlocked around the dumbbell-shaped components. Both the TTF unit and the DNP moiety are potential stations for CBPQT(4+), since they can establish charge-transfer and hydrogen bonding interactions with the bipyridinium units of the cyclophane, thereby introducing bistability into the [2]rotaxanes. In both constitutional isomers, (1)H NMR and absorption spectroscopies, together with electrochemical investigations, reveal that the CBPQT(4+) ring is predominantly located on the TTF unit, leading to the existence of a single translational isomer (co-conformation) in both cases. In addition, a model [2]rotaxane, incorporating hydrophobic tetraarylmethane stoppers at both ends of its dumbbell-shaped component, has also been synthesized as a point of reference. Molecular synthetic approaches were used to construct convergently the dumbbell-shaped compounds by assembling progressively smaller building blocks in the shape of the rigid spacer, the TTF unit and the DNP moiety, and the hydrophobic and hydrophilic stoppers. The two amphiphilic bistable [2]rotaxanes are constitutional isomers in the sense that, in one constitution, the TTF unit is adjacent to the hydrophobic stopper, whereas in the other, it is next to the hydrophilic stopper. All three bistable [2]rotaxanes have been isolated as green solids. Electrospray and fast atom bombardment mass spectra support the gross structural assignments given to all three of these mechanically interlocked compounds. Their photophysical and electrochemical properties have been investigated in acetonitrile. The results obtained from these investigations confirm that, in all three [2]rotaxanes, i) the CBPQT(4+) cyclophane encircles the TTF unit, ii) the CBPQT(4+) cyclophane shuttles between the TTF and DNP stations upon electrochemical or chemical oxidation/reduction of the TTF unit, and iii) folded conformations are present in which the CBPQT(4+) cyclophane, while encircling the TTF unit, interacts through its pi-accepting bipyridinium exteriors with other pi-donating components of the dumbbells, especially those located within the stoppers.     

Molecular Structure and Conformation of p-Bis(trimethylsilyl)benzene: A Study by Gas-Phase Electron Diffraction and Theoretical Calculations

The molecular structure and conformation of p-bis(trimethylsilyl)benzene have been investigated by gas-phase electron diffraction, ab initio MO calculations at the HF/6-31G*, MP2(f.c.)/6-31G*, and B3LYP/6-31G* levels, and MM3 molecular mechanics calculations. The calculations indicate the syn- and anti-coplanar conformations, with two bonds in the plane of the benzene ring, to be energy minima. The perpendicular conformations, with two bonds in a plane orthogonal to the ring plane, are transition states. The two coplanar conformers have nearly the same energy with a low interconversion barrier, 0.3–0.5 kJ mol^–1. The calculated lengths of the and bonds differ by only a few thousandths of an angstrom, in agreement with electron diffraction results from molecules containing either or bonds. The geometrical distortion of the benzene ring in p-bis(trimethylsilyl)-benzene may be described by superimposing independent distortions from each of the two SiMe₃ groups. The electron diffraction intensities from a previous study (Rozsondai, B.; Zelei, B.; Hargittai, I. J. Mol. Struct. 1982, 95, 187) have been reanalyzed, imposing constraints from the theoretical calculations, and using a model based on a 1:1 mixture of the two coplanar conformers. The effective torsion angles of the SiMe₃ groups may indicate nearly free rotation. Important geometrical parameters from the present electron diffraction analysis are , and . While the mean bond lengths are virtually the same from the previous and present analyses, the new ipso angle is in better agreement with the MO calculations [HF, 116.9° MP2(f.c.), 117.1° B3LYP, 116.9°].     

Reactivity of the NS2/3(907-1206)ASK(4) protein with beta-mercaptoethanol studied by electrospray ion trap mass spectrometry

The present work reports a mass spectrometric investigation of the NS2/3 protein, a protease from hepatitis C virus (HCV). During routine protein manipulation, in the presence of 100 mM beta-mercaptoethanol and under denatured conditions, the protein was unexpectedly modified at its cysteine residues, and the increased molecular weight corresponded to one molecule of beta-mercaptoethanol bound. The modified protein, once refolded, was found to be less active than the unmodified one. The aim of this work was to investigate whether the reactivity of cysteines with beta-mercaptoethanol involves one specific, highly reactive residue of the sequence, or if the modification is a random process. Liquid chromatography (LC) coupled on-line with an electrospray ion trap mass spectrometer was used to identify the modification sites. It was found that five cysteines out of nine had reacted with beta-mercaptoethanol, none of them showing a significantly higher reactivity than the others. 95% of sequence coverage was obtained.     

Free radical generation upon plasma treatment of cotton fibers and their initiation efficiency in surface-graft polymerization

Low-temperature plasma was used to activate mercerized cotton fabrics, to be followed by grafting with various methacrylates. Careful analysis of the experimental electron spin resonance (ESR) lineshapes of cotton samples treated at different RF powers made it possible to recognize and quantify four different species of free radicals still persistent 30 h after irradiation in the samples maintained under inert atmosphere. The decay rate of these species at room temperature was also evaluated with the analysis of the time evolution of the ESR spectra. The nature of the free radical species actually involved in the monomer grafting reaction has been discussed for cotton fabrics prepared under different plasma treatment conditions by analyzing the ESR lineshapes.     

Regioselective synthesis of cytotoxic 4-(1-alkynyl)-substituted 2-(5H)-furanones

4-(1-Alkynyl)-3-bromo- and 4-(1-alkynyl)-3-chloro-2(5H)-furanones have been regioselectively synthesized in moderate to good yields by a new version of the Pd/Cu-catalyzed Sonogashira reaction involving treatment of 1-alkynes with 3,4-dibromo- and 3,4-dichloro-2(5H)-furanone, respectively, in the presence of KF as a base. 4-(1-Alkynyl)-3-bromo-2(5H)-furanones have been found to be able to undergo Stille-type and Suzuki-type reactions with aryl(tributyl)tins and arylboronic acids, respectively, to give 4-(1-alkynyl)-3-aryl-2(5H)-furanones in modest to satisfactory yields. Some 4-(1-alkynyl)-substituted 2(5H)-furanones so prepared have been found to exhibit significant cytotoxic activities, especially against human leukemia cell lines.     

The oxidation state of a protein observed molecule-by-molecule.

We report the observation of the redox state of the blue copper protein azurin on the single-molecule level. The fluorescence of a small fluorophore attached to the protein is modulated by the change in absorption of the copper center via fluorescence resonance energy transfer (FRET). In our model system, the fluorescence label Cy5 was coupled to azurin from Pseudomonas aeruginosa via cysteine K27C. The Cy5 fluorescence was partially quenched by the absorption of the copper center of azurin in its oxidized state. In the reduced state, absorption is negligible, and thus no quenching occurs. We report on single-molecule measurements, both in solution by using fluorescence correlation spectroscopy (FCS) combined with fluorescence intensity distribution analysis (FIDA), and on surfaces by using wide-field fluorescence microscopy.     

The optimized-basis-set multiconfiguration spin-coupled method for the ab initio calculation of atomic and molecular electronic wave functions

An ab initio method for the calculation of atomic and molecular electronic wave functions is presented. The “Optimized-Basis-Set Multiconfiguration Spin-Coupled” (OBS –MCSC ) method may be viewed either as a multiconfiguration generalization of the spin-coupled approach or as a nonorthogonal variant of the MCSCF method. In addition, the OBS –MCSC method optimizes the basis-set exponential parameters simultaneously with all other variational parameters, through a second-derivative minimization procedure. Explicit analytic expressions for the required first and second derivatives of the energy with respect to all variational parameters are obtained. Test calculations prove the capability of the method to yield compact yet accurate electronic wave functions.© 1993 John Wiley & Sons, Inc.     

The effect of mechanical interlocking on crystal packing: predictions and testing

The first statistical analyses of the X-ray crystal structures of mechanically interlocked molecular architectures, the first molecular mechanics-based solid-state calculations on such structures and atomic force microscopy (AFM) experiments are used in combination to predict and test which types of benzylic amide macrocycle-containing rotaxanes possess mobile components in the crystalline phase and thus could form the basis of solid-state devices that function through mechanical motion at the molecular level. The statistical studies and calculations show that crystals formed by rotaxanes possess similarities and unanticipated differences with respect to the crystal packing of noninterlocked molecules. Trends in the rotaxane series correlate quantities related to crystal packing, molecular size, stoichiometry, and H-bonding. In accordance with the findings of Gavezzotti et al. for conventional molecular architectures, a principal component analysis (PCA) showed that three vectors related to the size, packing parameters, and stoichiometry are sufficient to describe the crystal properties of benzylic amide macrocycle-containing rotaxanes. When hydrogen bond-related quantities are included in a second PCA, they combine with the size and the stoichiometry vectors but not with packing-related parameters, indicating that the intramolecular "saturation" of the H-bonds (between the interlocked components) takes precedence over crystal assembly (i.e., intermolecular packing) in these systems. However, cluster analyses also suggest a major role for the energy of interaction between the macrocycle and its crystal environment. The identification of such a "privileged" interaction is of fundamental importance to the development of rotaxanes with in-crystal mobility of one or more of their interlocked components, a prerequisite for the exploitation of molecular level mechanical motion in the solid state. The set of trends found, together with the calculated energies, was used to propose guidelines for which benzylic amide macrocycle-containing rotaxanes are best suited to become building blocks for systems with mobile submolecular units in the crystalline phase. An experimental test of the predictive power of such guidelines was carried out using AFM on a rotaxane and its thread, identified by the study as a promising candidate for solid-state mobility. Intuitively, the rotaxane should be less mobile in the solid state since it has multiple sets of both hydrogen bond donors and acceptors that can form strong inter- and intramolecular H-bonds. Conversely, the thread has no hydrogen bond donors and cannot form such bonds. The AFM experiments, however, confirm the statistical analysis prediction that the rotaxane is considerably more mobile in the solid than the thread.     

Water rotational relaxation and diffusion in hydrated lysozyme

This paper is concerned with the dynamics of water around a small globular protein. Dipolar second-rank relaxation time and diffusion properties of surface water were computed by extensive molecular dynamics simulations of lysozyme in water which lasted a total of 28 ns. Our results indicate that the rotational relaxation of water in the vicinity of lysozyme is 3-7 times slower than that in the bulk depending on how the hydration shell is defined in the calculation. We have also verified that the dynamics of water translational diffusion in the vicinity of lysozyme have retardations similar to rotational relaxation. This is a common assumption in nuclear magnetic relaxation dispersion (NMRD) studies to derive residence times. In contrast to bulk water dynamics, surface water is in a dispersive diffusion regime or subdiffusion. Very good agreement of dipolar second-rank relaxation time with NMRD estimates is obtained by using appropriate dimensions of the hydration shell. Although our computed second-rank dipolar retardations are independent of the water model, SPC/E describes more realistically the time scale of the water dynamics around lysozyme than does TIP3P.