Using molecular simulation to predict solute solvation and partition coefficients in solvents of different polarity

A methodology is proposed for the prediction of the Gibbs energy of solvation (Δ(Solv)G) based on MD simulations. The methodology is then used to predict Δ(Solv)G of four solutes (namely propane, benzene, ethanol and acetone) in several solvents of different polarities (including n-hexane, n-hexadecane, ethylbenzene, 1-octanol, acetone and water) while testing the validity of the TraPPE force field parameters. Excellent agreement with experimental data is obtained, with average deviations of 0.2, 1.1, 0.8 and 1.2 kJ mol(-1), for the four solutes respectively. Subsequently, partition coefficients (log P) for forty different solute/solvent systems are predicted. The a priori knowledge of partition coefficient values is of high importance in chemical and pharmaceutical separation process design or as a measure of the increasingly important environmental fate. Here again, the agreement between experimental data and simulation predictions is excellent, with an absolute average deviation of 0.28 log P units. However, this deviation can be decreased down to 0.14 log P units, just by optimizing partial atomic charges of acetone in the water phase. Consequently, molecular simulation is proven to be a tool with strong physical basis able to predict log P with competitive accuracy when compared to the popular statistical methods with weak physical basis.     

The molecular basis for the behaviour of niobia species in oxidation reaction probed by theoretical calculations and experimental techniques

This paper describes the preparation and use of a new class of materials based on synthetic niobia as catalysts in the oxidation of organic compounds in aqueous medium. The chemical reactions were carried out in the presence of hydrogen peroxide (H₂O₂). The material was characterized with X-ray diffraction, XPS and H₂-TPR (temperature-programmed reduction) measurements. The organic molecule methylene-blue was used in the decomposition study as a probe contaminant. The analysis using the ESI-MS technique showed complete oxidation observed through different intermediates. This suggests the use of niobia species as an efficient Fenton-like catalyst in degradation reactions. Theoretical quantum DFT calculations were carried out in order to understand the degradation mechanism.     

Mechanical properties of polycrystalline RuSr2GdCu2O8 superconductor

The main objective of this paper is to report the room temperature hardness and elastic modulus of the RuSr₂GdCu₂O₈ superconductor phase by instrumented indentation. Polycrystalline samples were produced by a solid state reaction technique. The samples were also characterized by scanning electron microscopy, X-ray diffraction and electrical resistivity measurements. The influence of porosity on the mechanical properties was avoided by considering only those indentations inside the grains. The hardness and elastic modulus were 8.6 GPa and 145 GPa, respectively. These values are comparable with those of Y-123. The indentation fracture toughness evaluated after conventional Vickers indentation was 1.9 MPa m^1/2.     

Purification and Characterization of Cell Suspensions Peroxidase from Cotton (<Emphasis Type="Italic">Gossypium hirsutum</Emphasis> L.)

Two peroxidases, cPOD-I and rPOD-II, have been isolated and purified from cotton cell suspension and their biochemical characteristics studied. rPOD-II from R405-2000, a non-embryogenic cultivar, has higher activity than cPOD-I derived from Coker 312, which developed an embryogenic structure. The cPOD-I and rPOD-II had molecular mass of 39.1 and 64 kDa respectively, as determined by SDS-PAGE. Both enzymes showed high efficiency of interaction with the guaiacol at 25 mM. The optimal pH for cPOD-I and rPOD-II activity was 5.0 and 6.0, respectively. The enzyme had an optimum temperature of 25 °C and was relatively stable at 20–30 °C. The isoenzymes were highly inhibited by ascorbic acid, dithiothreitol, sodium metabisulfite, and β-mercaptoethanol. Their activities were highly enhanced by Al³⁺, Fe³⁺, Ca²⁺, and Ni²⁺, but they were moderately inhibited by Mn²⁺ and K⁺. The enzyme lost 50% to 62% of its activity in the presence of Zn²⁺ and Hg²⁺.     

The effect of immigrant communities coming from higher incidence tuberculosis regions to a host country

We introduce a new tuberculosis (TB) mathematical model, with 25 state-space variables where 15 are evolution disease states (EDSs), which generalises previous models and takes into account the (seasonal) flux of populations between a high incidence TB country (A) and a host country (B) with low TB incidence, where (B) is divided into a community (G) with high percentage of people from (A) plus the rest of the population (C). Contrary to some beliefs, related to the fact that agglomerations of individuals increase proportionally to the disease spread, analysis of the model shows that the existence of semi-closed communities are beneficial for the TB control from a global viewpoint. The model and techniques proposed are applied to a case-study with concrete parameters, which model the situation of Angola (A) and Portugal (B), in order to show its relevance and meaningfulness. Simulations show that variations of the transmission coefficient on the origin country has a big influence on the number of infected (and infectious) individuals on the community and the host country. Moreover, there is an optimal ratio for the distribution of individuals in (C) versus (G), which minimizes the reproduction number \(R_0\). Such value does not give the minimal total number of infected individuals in all (B), since such is attained when the community (G) is completely isolated (theoretical scenario). Sensitivity analysis and curve fitting on \(R_0\) and on EDSs are pursuit in order to understand the TB effects in the global statistics, by measuring the variability of the relevant parameters. We also show that the TB transmission rate \(\beta \) does not act linearly on \(R_0\), as it is common in compartment models where system feedback or group interaction do not occur. Further, we find the most important parameters for the increase of each EDS.     

Liquid chromatographic method for analysis of saponins in Maesa balansae extract active against leishmaniasis

A liquid chromatographic method was developed for the separation of six related triterpenoid saponins in Maesa balansae extracts with different purity, active against leishmaniasis. As stationary phase a Hypersil BDS C18 column (3 microm), 100 x 4.6 mm was used. The mobile phase was a mixture of methanol, acetonitrile, 5% (m/v) ammonium acetate, pH 6.5 and water. A linear gradient was developed for the analysis of crude extracts. An isocratic method was developed to analyze purified samples that mainly contained saponins 3 and 4, the most active saponins. The isocratic LC method was optimized and the robustness was evaluated with an experimental design. The method showed good selectivity, repeatability, linearity and sensitivity.     

Simultaneous determination of amino acids and neurotransmitters in plasma samples from schizophrenic patients by hydrophilic interaction liquid chromatography with tandem mass spectrometry

A sensitive, reproducible, and rapid method was developed for the simultaneous determination of underivatized amino acids (aspartate, serine, glycine, alanine, methionine, leucine, tyrosine, and tryptophan) and neurotransmitters (glutamate and γ‐aminobutyric acid) in plasma samples using hydrophilic interaction liquid chromatography coupled to triple quadrupole tandem mass spectrometry. The plasma concentrations of amino acids and neurotransmitters obtained from 35 schizophrenic patients in treatment with clozapine (27 patients) and olanzapine (eight patients) were compared with those obtained from 38 healthy volunteers to monitor the effectiveness of treatment. The chromatographic conditions separated ten target compounds within 3 min. This method presented linear ranges that varied from (lower limit of quantification: 9.7–13.3 nmol/mL) to (upper limit of quantification: 19.4–800 nmol/mL), intra‐ and interassay precision with coefficients of variation lower than 10%, and relative standard error values of the accuracy ranged from –2.1 to 9.9%. The proposed method appropriately determines amino acids and neurotransmitters in plasma from schizophrenic patients. Compared with the control group (healthy volunteers), the plasma levels of methionine in schizophrenic patients treated with olanzapine are statistically significantly higher. Moreover, schizophrenic patients treated with clozapine tend to have increased plasma levels of glutamate.     

Eine Farbenreaction der Orthodiketone

Ohne Zusammenfassung