AsLn2, a luciferin-related modified tripeptide from the bioluminescent earthworm Fridericia heliota

AsLn2, an unusual modified peptide, was isolated from the bioluminescent earthworm Fridericia heliota (Enchytraeidae). Its structure, elucidated by NMR and mass spectrometry, includes residues of tyrosine, CompX (a novel tyrosine modification product, reported in the accompanying paper), and N(omega)-acylated lysine. Chromatography, UV, and ¹H NMR data imply a close structural similarity of AsLn2 with F. heliota luciferin. AsLn2 appears to be an intermediate or by-product in F. heliota luciferin biosynthesis.     

Luminescence-Based Optical Fiber Chemical Sensors

A scheme for the simultaneous determination of temperature and analyte concentration for application in luminescence-based chemical sensors is proposed. This scheme is applied to an optical oxygen sensor, which is based on the quenching of the fluorescence of a ruthenium complex. Temperature measurement is performed using the excitation radiation and an absorption long-pass filter. Preliminary results are presented that show the viability of an oxygen measurement that is independent of temperature and optical power level. The possibility of self-referenced temperature measurements with semiconductor nanoparticles is also investigated. In order to optimize the sensor design, several different optical fiber probe geometries for oxygen sensing are tested and compared, including different methods of coupling radiation into the optical fiber system. Polyvinyl alcohol (PVA) and polyacrylamide membranes are tested as supports for sensor immobilization in fiber-optical pH sensing devices in aqueous solution. Some results are presented that show the feasibility of using fiber-optical pH indicators for remote monitoring.     

Amino,ammonio and aminioethenes: a theoretical study of their structure and energetics

We have performed high level ab initio quantum mechanical calculations for aminoethene and the three isomeric 1,1‐ (Z)‐ or (E)‐1,2‐diaminoethenes as well as their singly and doubly charged cations derived by loss of electrons and/or upon protonation. Gas phase molecular structures were computed at the MP2/6‐311 + G(3df,2p) level. Standard molar enthalpies of formation in the gas phase, at T = 298.15 K, were estimated using the G3 composite method and atomization, isodesmic and homodesmotic reactions. Other energetic parameters were also calculated at the G3 level: proton affinities, basicities and adiabatic ionization enthalpies. Theoretical and experimental data are compared. The reported experimental data refer only to aminoethene wherein the standard molar enthalpy of formation has a considerable uncertainty, although the molecular structure is well established. There are no such data, neither structural nor thermochemical, for any of the three isomeric diaminoethenes. Isoelectronic comparisons are made. For example, the diprotonated diaminoethenes are isoelectronic to isobutene and (Z)‐ and (E)‐butene, while the doubly ionized diaminoethenes are likewise related to trimethylenemethane and 1,3‐butadiene. Copyright © 2013 John Wiley & Sons, Ltd.     

Autoduality of the Compactified Jacobian

The following autoduality theorem is proved for an integralprojective curve C in any characteristic. Given an invertiblesheaf L of degree 1, form the corresponding Abel map A_L:C, which maps C into its compactifiedJacobian, and form its pullback map , which carries the connected component of 0 in the Picard schemeback to the Jacobian. If C has, at worst, points of multiplicity2, then is an isomorphism, and forming it commutes with specializing C. Much of the work in the paper is valid, more generally, fora family of curves with, at worst, points of embedding dimension2. In this case, the determinant of cohomology is used to constructa right inverse to . Then a scheme-theoretic version of the theorem of the cube is proved,generalizing Mumford's, and it is used to prove that is independent of the choice of L.Finally, the autoduality theorem is proved. The presentationscheme is used to achieve an induction on the difference betweenthe arithmetic and geometric genera; here, special propertiesof points of multiplicity 2 are used.     

Compactifying the relative Jacobian over families of reduced curves

We construct natural relative compactifications for the relative Jacobian over a family of reduced curves. In contrast with all the available compactifications so far, ours admit a Poincaré sheaf after an étale base change. Our method consists of studying the étale sheaf of simple, torsion-free, rank-1 sheaves on , and showing that certain open subsheaves of have the completeness property. Strictly speaking, the functor is only representable by an algebraic space, but we show that is representable by a scheme after an étale base change. Finally, we use theta functions originating from vector bundles to compare our new compactifications with the available ones.

     

Carbocationic rearrangement of pivaloyl cation and protonated pivalaldehyde in superacid medium: A novel solution equivalent of the McLafferty rearrangement

Both pivaloyl cation in the presence of hydride donors and protonated pivalaldehyde in superacid media (both aprotic and protic) rearrange to protonated methyl isopropyl ketone involving gitionic dicationic intermediates. In our earlier studies we have found that the rearrangement of pivaladehyde to methyl isopropyl ketone occurs quantitatively in the presence of various superacidic media such as anhydrous HF, triflic acid, boron trifluoride-2,2,2-trifluoroethanol complex (BF(3).2CF(3)CH(2)OH) etc. Our present study with environmentally more benign and stable amine:HF complexes, namely pyridinium poly(hydrogen fluoride) (PPHF) (5), poly(4-vinylpyridinium) poly(hydrogen fluoride) (6), and poly(ethyleniminium) poly(hydrogen fluoride) (PEIHF) (7) shows that these modified HF equivalents can carry sufficient amount of immobilized HF and provide ample acidity for complete isomerization of pivalaldehyde to methyl isopropyl ketone. Calculations on protioformyl, acetyl and pivaloyl dications at the B3LYP/6-311 ++ G(d,p) and CCSD(T)/6-311 ++ G(d,p)//B3LYP/6-311 ++ G(d,p) levels have been performed to compare the nature of protosolvation of formyl, acetyl, pivaloyl cations and protonated pivaladehyde in superacid media. These studies further suggest protosolvation of protonated pivalaldehyde leading to gitionic dications at high acidities resulting in the carbocatioinic rearrangement. The reported carbocationic rearrangement under superacidic activation represents a novel solution chemistry equivalent of the well known gas-phase McLafferty rearrangement.     

Studying the interaction between triazines and humic substances--a new approach using open tubular capillary electrochromatography

The strength of the interaction between a pesticide and the soil organic matter is a key parameter to assess the risk of it reaching to groundwater with potentially harmful effects to human health. In this work, a new approach that allows measuring such interactions in a few minutes using a purified fraction of the soil organic matter (humic substances) is detailed. The strength of sorption is assessed via the normalised difference of elution (retention factor, k′) between the chemical of interest and a neutral marker transported via electroosmotic flow through an open tubular column supporting the immobilised humic substances (open tubular capillary electrochromatography). The immobilisation was achieved by incubating a capillary, pre-coated with a monolayer of humic acid, with an acidic solution of humic substances. This induces the formation of a supramolecular structure of humic substances as it occurs in soils. This aggregate can easily be removed using alkaline solutions, and a new structure assembled using other humic substances (HS) or different incubations conditions. The whole procedure takes 2 h. This approach has been tested using five triazines and three types of humic substances. The order of the strength of sorption of the triazines as expected from relevant literature and the relative standard deviation of k′ was between 1 and 6%. Good repeatability was also observed after long period of wash, between re-coating and repeating of the full coating with a new capillary.     

Density functional theory study of 1,2‐dioxetanone decomposition in condensed phase

The decomposition of 1,2‐dioxetanone into a CO₂ molecule and into an excited state formaldehyde molecule was studied in condensed phase, using a density functional theory approach. Singlet and triplet ground and excited states were all included in the calculations. The calculations revealed a novel mechanism for the chemiluminescence of this compound. The triplet excitation can be explained by two intersystem crossings (ISCs) with the ground state, while the singlet excitation can be accounted by an ISC with the triplet state. The experimentally verified small excitation yield can then be explained by the presence of an energy barrier present in the potential energy surface of the triplet excited state, which will govern both triplet and singlet excitation. It was also found that the triplet ground state interacts with both the triplet excited and singlet ground states. A MPWB1K/mPWKCIS approach provided results in agreement with the existent literature. © 2012 Wiley Periodicals, Inc.