Molecular modeling of a series of dehydroquinate dehydratase type II inhibitors of Mycobacterium tuberculosis and design of new binders

Molecular Diversity - Tuberculosis, caused by Mycobacterium tuberculosis (M. tuberculosis), is still responsible for a large number of fatal cases, especially in developing countries with alarming...     

Identification and characterization of isomeric N-glycans of human alfa-acid-glycoprotein by stable isotope labelling and ZIC-HILIC-MS in combination with exoglycosidase digestion

In this study, a ZIC-HILIC-MS methodology for the analysis of N-glycan isomers was optimized to obtain greater detection sensitivity and thus identify more glycan structures in hAGP. In a second step, this method was combined with glycan reductive isotope labelling (GRIL) through [¹²C₆]/[¹³C₆]-aniline and exoglycosidase digestion to characterize the different glycan isomers. The GRIL method allows the peak areas resulting from two different labelled samples to be compared, since neither retention time shifts nor variations in the ionization of glycans between these samples are obtained. First, sialic acid linkage assignations were performed for most hAGP glycan isomers with α2-3 sialidase digestion. Bi-, tri- and tetraantennary glycan isomers with different terminal sialic acid linkages to galactose (α2-3 or α2-6) were assigned, and the potential of this technique for the structural characterization of isobaric isomers was therefore demonstrated. Furthermore, fucose linkage isomers of hAGP glycans were also characterized using this isotope-labelling approach in combination with α1-3,4 fucosidase and β1-4 galactosidase digestion. α1-3 antennary fucoses and α1-6 core fucosylation were detected in hAGP fucosylated glycans. These established methodologies can be extremely useful for patho-glycomic studies to characterize glycoproteins of biomedical interest and find novel glycan isomers that could be used as biomarkers in cancer research.     

Flow-through solid-phase reflectometric method for simultaneous multiresidue determination of nitrophenol derivatives

In this paper, a flow-through optosensor based on diffuse reflectance spectroscopy and multivariate regression modelling is proposed for simultaneous multiresidue determination of trace level concentrations of nitro-substituted phenols. The optrode integrates on-line anion-exchange sorptive preconcentration and matrix removal with direct detection of sorbed species onto the sensing layer and chemometric deconvolution of overlapped spectra. After recording of the reflectometric spectrum, fast chemosensor regeneration is accomplished with an acidic methanolic eluent followed by a metered volume of alkaline solution. The full automation of the analytical procedure is ensured by flow-programming as executed via a software-controlled multisyringe pump and a set of multiposition and solenoid valves.

Under the optimized chemical and physical variables, the 3σ_blank detection limits for 2-, and 4-nitrophenol and 2,4-dinitrophenol were 0.69, 0.42 and 0.37 μg L⁻¹, respectively, for a sample loading volume of 4.0 mL with enrichment factors of 73, 74 and 81, respectively, and repeatability better than 3.0%. The analytical applicability of the optosensing system was asserted by the satisfactory results attained in its application to monitoring of nitrophenol derivatives in spiked environmental waters including highly saline matrices via the standard additions method.     

Energetics and bonding in beryllium metallized carbon clusters

Small carbon clusters C, C₂ and C₃ metallized with beryllium were studied by first principles within the hybrid density functional approach with generalized gradient correction. Cluster isomer structures for the ground state and several excited states where systematically calculated for C_xBe_y with x = 1–3 and y = 1–4 including the vibrational analysis of all states. Ionization potentials and electron affinities are calculated for the ground state cluster isomers. The thermal stability of the ground state isomers was verified within the harmonic approximation of the Helmholtz free energy up to temperatures of about 1000 K. Within the family of clusters studied, C₂Be₃ undergoes a solid-like structural transition at about 260 K changing from a planar structure at low temperatures to a linear isomer at high temperatures.     

Synthesis of IB-01211, a cyclic peptide containing 2,4-concatenated thia- and oxazoles, via Hantzsch macrocyclization

[structure: see text] An efficient and versatile convergent synthesis of IB-01211 based on a combination of peptide and heterocyclic chemistry is described. The key step in the synthesis is macrocyclization through intramolecular Hantzsch formation of the thiazole ring. Dehydration of a free primary alcohol to furnish the exocyclic methylidene present in the natural product was applied during the macrocyclization.     

Liquid–liquid phase behaviour,liquid–liquid density,and interfacial tension of multicomponent systems at 298 K

Experimental liquid–liquid phase diagrams are presented for the multicomponent systems isooctane–benzene–(80 mass% methanol + 20 mass% water)–5 mass% isobutyl alcohol (2-methyl-1-propanol) and isooctane–benzene–(80 mass% methanol + 20 mass% water)–15 mass% isobutyl alcohol, at 298.15 K. The density and interfacial tension of conjugate phases of concentration located in the isothermal binodal have been determined at 298.15 K for the partially miscible systems: isooctane–benzene–methanol, isooctane–benzene–(80 mass% methanol + 20 mass% water), isooctane–benzene–(80 mass% methanol + 20 mass% water)–5 mass% isobutyl alcohol, and isooctane–benzene–(80 mass% methanol + 20 mass% water)–15 mass% isobutyl alcohol. The experimental tie-line data define the binodal or coexistence curve of the two studied multicomponent systems and depending on the initial isobutyl alcohol concentration the liquid–liquid phase diagram is either of type II, with low alcohol concentration, or type I, with high concentration of alcohol, which is a clear indication that the solubility of the partially miscible systems is greatly enhanced via the co-solvency phenomenon. It is observed that both the density of each conjugate phase and the interfacial tension of each tie-line are valuable indicators of the degree of solubility of the multicomponent systems. Furthermore the experimental tie-lines data were correlated with the NRTL and UNIQUAC solution models with satisfactory quantitative results.     

Study of immobilized metal affinity chromatography sorbents for the analysis of peptides by on‐line solid‐phase extraction capillary electrophoresis‐mass spectrometry

Several commercial immobilized metal affinity chromatography sorbents were evaluated in this study for the analysis of two small peptide fragments of the amyloid β‐protein (Aβ) (Aβ(1–15) and Aβ(10–20) peptides) by on‐line immobilized metal affinity SPE‐CE (IMA‐SPE‐CE). The performance of a nickel metal ion (Ni(II)) sorbent based on nitrilotriacetic acid as a chelating agent was significantly better than two copper metal ion (Cu(II)) sorbents based on iminodiacetic acid. A BGE of 25 mM phosphate (pH 7.4) and an eluent of 50 mM imidazole (in BGE) yielded a 25‐fold and 5‐fold decrease in the LODs by IMA‐SPE‐CE‐UV for Aβ(1–15) and Aβ(10–20) peptides (0.1 and 0.5 μg/mL, respectively) with regard to CE‐UV (2.5 μg/mL for both peptides). The phosphate BGE was also used in IMA‐SPE‐CE‐MS, but the eluent needed to be substituted by a 0.5% HAc v/v solution. Under optimum preconcentration and detection conditions, reproducibility of peak areas and migration times was acceptable (23.2 and 12.0%RSD, respectively). The method was more sensitive for Aβ(10–20) peptide, which could be detected until 0.25 μg/mL. Linearity for Aβ(10–20) peptide was good in a narrow concentration range (0.25–2.5 μg/mL, R² = 0.93). Lastly, the potential of the optimized Ni(II)‐IMA‐SPE‐CE‐MS method for the analysis of amyloid peptides in biological fluids was evaluated by analyzing spiked plasma and serum samples.     

Spectrophotometric determination of chloride in waters using a multisyringe flow injection system

A multisyringe flow injection system (MSFIA) with spectrophotometric detection is proposed as a fast, robust and low-reagent consumption system for the determination of chloride (Cl⁻) in waters. The system is based in the classic reaction of Cl⁻ with Fe³⁺ and Hg(SCN)₂, but due to the hazardous properties of this last reagent, the proposed methodology has been developed with the aim to minimize the consumption of this one, consuming less than 0.05 mg of Hg for a Cl⁻ determination, being the system of this type with the lowest Hg consumption. The linear working range was between 1 and 40 mg L⁻¹ Cl⁻ and the detection limit was 0.2 mg L⁻¹ Cl⁻. The repeatability (RSD) was 0.8% for a 10 mg L⁻¹ Cl⁻ solution, and the injection throughput was 130 h⁻¹. The proposed system is compared with other chloride monitoring flow systems, this comparison is realized with a point of view of the equilibrium between the obtained analytical features and produced residues toxicity. The proposed system was applied to the determination of Cl⁻ in mineral, tap and well water.