Hydrogen abstraction from deoxyribose by a neighbouring uracil-5-yl radical

Hydrogen abstraction from the C1' and C2' positions of deoxyadenosine by a neighbouring uracil-5-yl radical in the 5'-AU*-3' DNA sequence is explored using DFT. This hydrogen abstraction is the first step in a sequence leading to single or double strand break in DNA. The uracil-5-yl radical can be the result of photolysis or low-energy electron (LEE) attachment. If the radical is produced by photolysis the neighbouring adenine will become a cation radical and if it is produced by LEE the adenine will remain neutral. The hydrogen abstraction reactions for both cases were investigated. It is concluded that it is possible for the uracil-5-yl to abstract hydrogen from C1' and C2'. When adenine is neutral there is a preference for the C1' site and when the adenine is a radical cation the C2' site is the preferred. If adenine is positively charged, the rate-limiting step when abstracting hydrogen from C1' is the formation of an intermediate crosslink between uracil and adenine. This crosslink might be avoided in dsDNA, making C1' the preferred site for abstraction.     

Catalytic enantioselective domino oxa-michael/aldol condensations: asymmetric synthesis of benzopyran derivatives

The first direct organocatalytic asymmetric domino oxa-Michael/aldol condensation reaction is presented. The unprecedentedly simple, chiral, pyrrolidine-catalyzed asymmetric domino reactions between salicylic aldehyde derivatives and alpha,beta-unsaturated aldehydes proceed with high chemo- and enantioselectivities to give the corresponding chromene-3-carbaldehyde derivatives in high yields and with ee values of 83-98%.     

Binuclear iron-sulfur complexes with bidentate phosphine ligands as active site models of Fe-hydrogenase and their catalytic proton reduction

The displacement of CO in a few simple Fe(I)-Fe(I) hydrogenase model complexes by bisphosphine ligands Ph2P-(CH2)n-PPh2 [with n = 1 (dppm) or n = 2 (dppe)] is described. The reaction of [{mu-(SCH2)2CH2}Fe2(CO)6] (1) and [{mu-(SCH2)2N(CH2CH2CH3)}Fe2(CO)6] (2) with dppe gave double butterfly complexes [{mu-(SCH2)2CH2}Fe2(CO)5(Ph2PCH2)]2 (3) and [{mu-(SCH2)2N(CH2CH2CH3)}Fe2(CO)5(Ph2PCH2)]2 (4), where two Fe2S2 units are linked by the bisphosphine. In addition, an unexpected byproduct, [{mu-(SCH2)2N(CH2CH2CH3)}Fe2(CO)5{Ph2PCH2CH2(Ph2PS)}] (5), was isolated when 2 was used as a substrate, where only one phosphorus atom of dppe is coordinated, while the other has been converted to P=S, presumably by nucleophilic attack on bridging sulfur. By contrast, the reaction of 1 and 2 with dppm under mild conditions gave only complexes [{mu-(SCH2)2CH2}Fe2(CO)5(Ph2PCH2PPh2)] (6) and [{mu-(SCH2)2N(CH2CH2CH3)}Fe2(CO)5(Ph2PCH2PPh2)] (8), where one ligand coordinated in a monodentate fashion to one Fe2S2 unit. Furthermore, under forcing conditions, the complexes [{mu-(SCH2)2CH2}Fe2(CO)4{mu-(Ph2P)2CH2}] (7) and [{mu-(SCH2)2N(CH2CH2CH3)}Fe2(CO)4{mu-(Ph2P)2CH2}] (9) were formed, where the phosphine acts as a bidentate ligand, binding to both the iron atoms in the same molecular unit. Electrochemical studies show that the complexes 3, 4, and 9 catalyze the reduction of protons to molecular hydrogen, with 4 electrolyzed already at -1.40 V versus Ag/AgNO3 (-1.0 V vs NHE).     

Sulfur X-ray absorption and vibrational spectroscopic study of sulfur dioxide, sulfite, and sulfonate solutions and of the substituted sulfonate ions X3CSO3- (X = H, Cl, F)

Sulfur K-edge X-ray absorption near-edge structure (XANES) spectra have been recorded and the S(1s) electron excitations evaluated by means of density functional theory-transition potential (DFT-TP) calculations to provide insight into the coordination, bonding, and electronic structure. The XANES spectra for the various species in sulfur dioxide and aqueous sodium sulfite solutions show considerable differences at different pH values in the environmentally important sulfite(IV) system. In strongly acidic (pH < approximately 1) aqueous sulfite solution the XANES spectra confirm that the hydrated sulfur dioxide molecule, SO2(aq), dominates. The theoretical spectra are consistent with an OSO angle of approximately 119 degrees in gas phase and acetonitrile solution, while in aqueous solution hydrogen bonding reduces the angle to approximately 116 degrees . The hydration affects the XANES spectra also for the sulfite ion, SO32-. At intermediate pH ( approximately 4) the two coordination isomers, the sulfonate (HSO3-) and hydrogen sulfite (SO3H-) ions with the hydrogen atom coordinated to sulfur and oxygen, respectively, could be distinguished with the ratio HSO3-:SO3H- about 0.28:0.72 at 298 K. The relative amount of HSO3- increased with increasing temperature in the investigated range from 275 to 343 K. XANES spectra of sulfonate, methanesulfonate, trichloromethanesulfonate, and trifluoromethanesulfonate compounds, all with closely similar S-O bond distances in tetrahedral configuration around the sulfur atom, were interpreted by DFT-TP computations. The energy of their main electronic transition from the sulfur K-shell is about 2478 eV. The additional absorption features are similar when a hydrogen atom or an electron-donating methyl group is bonded to the -SO3 group. Significant changes occur for the electronegative trichloromethyl (Cl3C-) and trifluoromethyl (F3C-) groups, which strongly affect the distribution especially of the pi electrons around the sulfur atom. The S-D bond distance 1.38(2) A was obtained for the deuterated sulfonate (DSO3-) ion by Rietveld analysis of neutron powder diffraction data of CsDSO3. Raman and infrared absorption spectra of the CsHSO3, CsDSO3, H3CSO3Na, and Cl3CSO3Na.H2O compounds and Raman spectra of the sulfite solutions have been interpreted by normal coordinate calculations. The C-S stretching force constant for the trichloromethanesulfonate ion obtains an anomalously low value due to steric repulsion between the Cl3C- and -SO3 groups. The S-O stretching force constants were correlated with corresponding S-O bond distances for several oxosulfur species.     

Synthesis and characterization of 2,6-di(quinolin-8-yl)pyridines. New ligands for bistridentate Ru(II) complexes with microsecond luminescent lifetimes

The synthesis of 4-substituted and 4-aryl-substituted 2,6-di(quinolin-8-yl)pyridines is described. The tridentate ligands were prepared via a palladium-catalyzed Suzuki-Miyaura cross-coupling reaction or via a one-step ring-forming reaction generating the central pyridine ring. X-ray crystal structures and 1H NMR shifts are discussed and compared to the corresponding data for a RuII bistridentate complex. Intramolecular stacking of two quinoline units in the RuII complex is suggested by 1H NMR data and also observed in the X-ray structure.     

Apollonian circle packings: Number theory II. Spherical and hyperbolic packings

Apollonian circle packings arise by repeatedly filling the interstices between mutually tangent circles with further tangent circles. In Euclidean space it is possible for every circle in such a packing to have integer radius of curvature, and we call such a packing an integral Apollonian circle packing. There are infinitely many different integral packings; these were studied in Part I (J. Number Theory 100, 1–45, 2003). Integral circle packings also exist in spherical and hyperbolic space, provided a suitable definition of curvature is used and again there are an infinite number of different integral packings. This paper studies number-theoretic properties of such packings. This amounts to studying the orbits of a particular subgroup of the group of integral automorphs of the indefinite quaternary quadratic form . This subgroup, called the Apollonian group, acts on integer solutions . This paper gives a reduction theory for orbits of acting on integer solutions to valid for all integer k. It also classifies orbits for all k≡0 (mod 4) in terms of an extra parameter n and an auxiliary class group (depending on n and k), and studies congruence conditions on integers in a given orbit. Much of this work was done while the authors were at AT&T Labs-Research, whom the authors thank for support. N. Eriksson was also supported by an NDSEG fellowship and J.C. Lagarias by NSF grant DMS-0500555.     

Structural Properties,Mössbauer Spectra,and Magnetism of Perovskite‐Type Oxides SrFe1–xTixO3–y

Perovskite‐type phases SrFe_1–xTi_xO_3–y with 0.1 ≤ x ≤ 0.7 have been prepared from the oxides, and, in order to reach high oxygen contents and Fe^IV fractions, annealed at oxygen pressures of 60 MPa. The materials were characterised by powder x‐ray and neutron diffraction, ⁵⁷Fe Mössbauer spectroscopy, and magnetic susceptibility measurements. All samples of the series crystallise in a cubic perovskite structure and reveal considerable oxygen deficiency. The Mössbauer parameters suggest that for x = 0.1, where the Fe^IV fraction is about 90%, the itinerant electronic state of SrFeO₃ is essentially retained. In materials with larger x increasing amounts of Ti^IV and Fe^III ions lead to a stronger localisation of the σ* (Fe 3 d – O 2 p) electrons. There is no evidence for a charge disproportionation of Fe^IV in any of the materials. Magnetic susceptibility measurements show a divergence of zero‐field cooled and field‐cooled data below a temperature T_m and deviations from Curie‐Weiss behaviour above T_m. The data are indicative of spin‐glass behaviour due to disorder and competing exchange interactions.     

Methyl 3‐O‐β‐l‐fucopyranosyl α‐d‐glucopyranoside trihydrate

The water content of the title compound, C₁₃H₂₄O₁₀·3H₂O, creates an extensive hydrogen‐bonding pattern, with all the hydroxyl groups of the disaccharide acting as hydrogen‐bond donors and acceptors. The water molecules are arranged in columns along the crystallographic b axis and form, together with one of the hydroxyl groups, infinite hydrogen‐bonded chains. The conformation of the disaccharide is described by glycosidic torsion angles of −38 and 18°.