9‐Benzoyl‐3,3,6,6‐tetramethyl‐1,2,3,4,5,6,7,8‐octahydroxanthene‐1,8‐dione: molecular conformation and supramolecular aggregation in xanthenediones

In the title compound, C₂₄H₂₆O₄, (I), the central ring of the fused tricyclic ring system adopts a shallow boat conformation, while the two outer rings adopt envelope conformations. The molecules are linked into C(9) chains by a single C—H...O hydrogen bond. The significance of this study lies in its comparison of the conformation and supramolecular aggregation of (I) with those of related compounds in the published literature.     

Synthesis and characterization of acrylamide/acrylic acid hydrogels crosslinked using a novel diacrylate of glycerol to produce multistructured materials

In this work we propose a new crosslinking agent and the method to use it for the synthesis of acrylate based hydrogels. The use of this diacrylate of glycerol, synthesized in our laboratory, allows the generation of materials with well defined micro‐structures in the dry state, unique meso‐ and macro‐structures during swelling, and enhanced mechanical properties and swelling capacity in water. These properties depend on the crosslinking agent concentration, as well as synthesis thermal history. Poly(acrylamide‐co‐acrylic acid) hydrogels are commonly crosslinked with N, N′‐methylenebisacrylamide or N‐isopropylacrylamide. Here we obtain and use a new crosslinking agent, obtained from the reaction between glycerol and acrylic acid to produce a Diacrylate of glycerol (DAG). Two synthesis methods at equivalent molar ratio of acrylamide/acrylic acid (AM/AA) were analyzed. The mechanical properties, the swelling capacity, and the morphology at microscale of these hydrogels showed a well defined transition at a critical concentration of crosslinking agent. DAG induces the generation of hydrogels with hierarchichal structure. The micro‐structure surface morphology was investigated by scanning electron microscopy, the meso‐structure by polarized light microscopy and the macro‐structure by CCD imaging. The hydrogels with hierarchical structures showed improved mechanical properties when compared with structureless hydrogels. Control of the microstructure allows the generation of materials for different applications, i.e. templates or smart materials that interact with electromagnetic radiation. © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 2667–2679, 2008     

Applications of NMR crystallography to problems in biomineralization: refinement of the crystal structure and (31)p solid-state NMR spectral assignment of octacalcium phosphate

By combining X-ray crystallography, first-principles density functional theory calculations, and solid-state nuclear magnetic resonance spectroscopy, we have refined the crystal structure of octacalcium phosphate (OCP), reassigned its (31)P NMR spectrum, and identified an extended hydrogen-bonding network that we propose is critical to the structural stability of OCP. Analogous water networks may be related to the critical role of the hydration state in determining the mechanical properties of bone, as OCP has long been proposed as a precursor phase in bone mineral formation. The approach that we have taken in this paper is broadly applicable to the characterization of crystalline materials in general, but particularly to those incorporating hydrogen that cannot be fully characterized using diffraction techniques.     

Optimization of headspace experimental factors to determine chlorophenols in water by means of headspace solid-phase microextraction and gas chromatography coupled with mass spectrometry and parallel factor analysis

In this work an analytical procedure based on headspace solid-phase microextraction and gas chromatography coupled with mass spectrometry (HS-SPME–GC/MS) is proposed to determine chlorophenols with prior derivatization step to improve analyte volatility and therefore the decision limit (CCα). After optimization, the analytical procedure was applied to analyze river water samples. The following analytes are studied: 2,4-dichlorophenol (2,4-DCP), 2,4,6-trichlorophenol (2,4,6-TrCP), 2,3,4,6-tetrachlorophenol (2,4,6-TeCP) and pentachlorophenol (PCP). A D-optimal design is used to study the parameters affecting the HS-SPME process and the derivatization step. Four experimental factors at two levels and one factor at three levels were considered: (i) equilibrium/extraction temperature, (ii) extraction time, (iii) sample volume, (iv) agitation time and (v) equilibrium time. In addition two interactions between four of them were considered. The D-optimal design enables the reduction of the number of experiments from 48 to 18 while maintaining enough precision in the estimation of the effects. As every analysis took 1 h, the design is blocked in 2 days.     

Exploring the electron transfer pathways in photosystem I by high-time-resolution electron paramagnetic resonance: observation of the B-side radical pair P700(+)A1B(-) in whole cells of the deuterated green alga Chlamydomonas reinhardtii at cryogenic temperatures

Crystallographic models of photosystem I (PS I) highlight a symmetrical arrangement of the electron transfer cofactors which are organized in two parallel branches (A, B) relative to a pseudo-C2 symmetry axis that is perpendicular to the membrane plane. Here, we explore the electron transfer pathways of PS I in whole cells of the deuterated green alga Chlamydomonas reinhardtii using high-time-resolution electron paramagnetic resonance (EPR) at cryogenic temperatures. Particular emphasis is given to quantum oscillations detectable in the tertiary radical pairs P700(+)A1A(-) and P700(+)A1B(-) of the electron transfer chain. Results are presented first for the deuterated site-directed mutant PsaA-M684H in which electron transfer beyond the primary electron acceptor A0A on the PsaA branch of electron transfer is impaired. Analysis of the quantum oscillations, observed in a two-dimensional Q-band (34 GHz) EPR experiment, provides the geometry of the B-side radical pair. The orientation of the g tensor of P700(+) in an external reference system is adapted from a time-resolved multifrequency EPR study of deuterated and 15N-substituted cyanobacteria (Link, G.; Berthold, T.; Bechtold, M.; Weidner, J.-U.; Ohmes, E.; Tang, J.; Poluektov, O.; Utschig, L.; Schlesselman, S. L.; Thurnauer, M. C.; Kothe, G. J. Am. Chem. Soc. 2001, 123, 4211-4222). Thus, we obtain the three-dimensional structure of the B-side radical pair following photoexcitation of PS I in its native membrane. The new structure describes the position and orientation of the reduced B-side quinone A1B(-) on a nanosecond time scale after light-induced charge separation. Furthermore, we present results for deuterated wild-type cells of C. reinhardtii demonstrating that both radical pairs P700(+)A1A(-) and P700(+)A1B(-) participate in the electron transfer process according to a mole ratio of 0.71/0.29 in favor of P700(+)A1A(-). A detailed comparison reveals different orientations of A1A(-) and A1B(-) in their respective binding sites such that formation of a strong hydrogen bond from A1(-) to the protein backbone is possible only in the case of A1A(-). We suggest that this is relevant to the rates of forward electron transfer from A1A(-) or A1B(-) to the iron-sulfur center F(X), which differ by a factor of 10. Thus, the present study sheds new light on the orientation of the phylloquinone acceptors in their binding pockets in PS I and the effect this has on function.     

Anthocyanin identification and composition of wild Vitis spp. accessions by using LC–MS and LC–NMR

The composition and concentration of anthocyanins of grape berry skins were analyzed in order to assess phenotypic variation between four grape wine varieties belonging to 4 different species: Vitis vinifera, Vitis amurensis, Vitis cinerea and Vitis X champinii. High-performance liquid chromatography coupled to mass spectrometry (LC–MS) and NMR spectroscopy (LC–NMR) were used to separate and identify the structure of anthocyanins present in these species. Combination of LC–MS and LC–NMR data resulted in the identification of 33 anthocyanins. In particular, newly reported cis isomers of p-coumaric-derivatives were identified (petunidin-, peonidin- and malvidin-3-(6-p-coumaroyl)-5-diglucoside). In V. cinerea and V. vinifera, anthocyanins were monoglucoside derivatives whereas in V. amurensis and V. X champinii, both mono- and diglucoside derivatives were identified. Malvidin-, delphinidin- and petunidin-derivatives were, respectively, the most abundant components in V. cinerea and V. vinifera, V. amurensis and V. X champinii.     

Neutron diffraction study of the type I clathrate Ba8Al(x)Si(46-x): site occupancies, cage volumes, and the interaction between the guest and the host framework

Samples with the type I clathrate structure and composition Ba(8)Al(x)Si(46-x), where x = 8, 10, 12, 14, and 15, were examined by neutron powder diffraction at 35 K. The clathrate type I structure contains Ba cations as guests in a framework derived from tetrahedrally coordinated Al/Si atoms. The framework is made up of five- and six-membered rings that form dodecahedral and tetrakaidecahedral cages. The change in distances between tetrahedral sites across the series is used to develop a model for the mixed Al/Si occupancy observed in the framework. The calculated volumes of the cages that contain the Ba atoms display a linear increase with increasing Al composition. In the smaller dodecahedral cages, the Ba atomic displacement parameter is symmetry constrained to be isotropic for all compositions. In the larger tetrakaidecahedral cages, the anisotropic atomic displacement of the Ba atom depends upon the composition: the displacement is perpendicular (x = 8) and parallel (x = 15) to the six-membered ring. This difference in direction of the displacement parameter is attributed to interaction with the Al in the framework and not to the size of the cage volume as x increases from 8 to 15. The influence of the site occupation of Al in the framework on displacement of the cation at the 6d site is demonstrated.     

N‐arylamides and N‐arylcarbamates N?CO internal rotation barrier study by molecular modeling

Amides and carbamates present an energetic barrier associated to N? C(O) bond rotation, which determines two different equilibrium geometries. In this work, the conformational equilibrium of formanilide, acetanilide, methyl and t‐butyl phenylcarbamates, and their N‐methylderivatives was studied by AM1 and B3LYP/6‐31G(d,p) calculations. The effect of aryl p‐substituents (MeO, Me, Cl, Br, CN, and NO₂) was also studied. Amide barriers were found by DFT calculation between 12 and 21 kcal/mol. Carbamates, on the other hand, showed barriers between 11 and 15 kcal/mol. AM1 underestimates the energetic barriers and provides values around half those obtained by B3LYP/6‐31G(d,p) calculations. Electron withdrawing substituents on aryl group decrease the barrier. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

Plasmid DNA damage induced by helium atmospheric pressure plasma jet

Recently demonstrated ghost interference using correlated photons of different frequencies, has been theoretically analyzed. The calculation predicts an interesting nonlocal effect: the fringe width of the ghost interference depends not only on the wave-length of the photon involved, but also on the wavelength of the other photon with which it is entangled. This feature, arising because of different frequencies of the entangled photons, was hidden in the original ghost interference experiment. This prediction can be experimentally tested in a slightly modified version of the experiment.