Noncovalent triblock copolymers based on a coiled-coil peptide motif

The formation of a noncovalent triblock copolymer based on a coiled-coil peptide motif is demonstrated in solution. A specific peptide pair (E and K) able to assemble into heterocoiled coils was chosen as the middle block of the polymer and conjugated to poly(ethylene glycol) (PEG) and polystyrene (PS) as the outer blocks. Mixing equimolar amounts of the polymer-peptide block copolymers PS-E and K-PEG resulted in the formation of coiled-coil complexes between the peptides and subsequently in the formation of the amphiphilic triblock copolymer PS-E/K-PEG. Aqueous self-assembly of the separate peptides (E and K), the block copolymers (PS-E and K-PEG), and equimolar mixtures thereof was studied by circular dichroism, dynamic light scattering, and cryogenic transmission electron microscopy. It was found that the noncovalent PS-E/K-PEG copolymer assembled into rodlike micelles, while in all other cases, spherical micelles were observed. Temperature-dependent studies revealed the reversible nature of the coiled-coil complex and the influence of this on the morphology of the aggregate. A possible mechanism for these transitions based on the interfacial free energy and the free energy of the hydrophobic blocks is discussed. The self-assembly of the polymer-peptide conjugates is compared to that of polystyrene-b-poly(ethylene glycol), emphasizing the importance of the coiled-coil peptide block in determining micellar structure and dynamic behavior.     

Separation of molecular tracers sorbed onto atmospheric particulate matter by flash chromatography

In to order increase sensitivity and to reduce the background induced by matrix effects, a method was developed that uses flash chromatography to separate various compounds present in atmospheric aerosol samples prior to their analysis with different analytical techniques (GC–MS, GC–FID, HPLC). For this purpose, flash chromatography using a 4 g silica gel column crossed by eluent at a flow rate of 20 mL min⁻¹ was used. An eluent with enhanced polarity is needed to separate nonpolar (linear and branched alkanes), semipolar (PAH, nitro-PAH and cholesterol) and polar (methoxyphenols, alkanoic acids, and levoglucosan) compounds. Three combinations of solvents were used: hexane for the nonpolar fraction (F1), toluene/hexane for the semipolar fraction (F2) and dimethylformamide for the polar fraction (F3). The use of different eluents for each fraction allows separation of the sample to be accomplished with good repeatability and satisfying yields [85 ± 5% for F1, 81 ± 8% (PAHs), 89 ± 6% (nitro-PAHs) and 74 ± 7% (cholesterol) for F2 and 79 ± 7% (n-alkanoic acids), 40 ± 11% (methoxyphenols) and 77 ± 6% (levoglucosan) for F3]. The methoxyphenol yields were low due to losses during the concentration/evaporation step. This method was then applied to analyse the organic composition of particles collected at an urban site in Strasbourg (France).     

Metalation of cyclic pseudopeptidic thiosulfinates with Ni(II) and Zn(II) after ring opening: a mechanistic investigation

Thiosulfinates are an emerging class of oxidized sulfur species that are frequently supposed to be involved in biochemical processes. Reaction of 12- and 10-membered ring pseudopeptidic thiosulfinates 1a (4,4,7,7-tetramethyl-1,3,4,7,8,10-hexahydro-5,6,1,10-benzodithiadiazacyclododecine-2,9-dione 5-oxide) and 1b (3,3,6,6-tetramethyl-1,8-dihydro-4,5,1,8-benzodithiadiazecine-2,7(3H,6H)-dione 4-oxide) with a Ni(II) salt leads after ring cleavage under alkaline conditions to the isolation of diamidato/thiolato/sulfinato complexes. These two thiolato/sulfinato complexes of nickel, which can also be prepared by dioxygen oxidation of the parent diamidato/dithiolato complexes, were characterized by X-ray crystallography. They show a square-planar geometry with a S-bonded sulfinato ligand. A similar reaction between 1b and a Zn(II) salt leads to a thiolato/sulfinato complex with an O-bonded sulfinate via the intermediate formation of a mixed thiolato/sulfinic ester. On the basis of 1H NMR, IR, and mass analyses, the sulfinic ester in the intermediate is proposed to be O-bonded to the zinc center. Then, an in-depth study of the cleavage of these thiosulfinates with the oxyanions RO- and HO- was performed. This led, after trapping of the open species with CH3I, to the identification of three polyfunctionalized products containing a methyl thioether, with either an isothiazolidin-3-one S-oxide, a methyl sulfone, or a methyl sulfinic ester. All of these products arise from a selective nucleophilic attack at the sulfinyl sulfur, promoted either directly by RO- or HO- or by an internal peptidic nitrogen of the thiosulfinate after deprotonation with RO- or HO-.     

Perdeuterated n-alkanes for improved data processing in thermal desorption gas chromatography/mass spectrometry I. Retention indices for identification

The identification of organic compounds by GC/MS is useful in various areas such as fuel, indoor and outdoor air and flavour and fragrance applications. Multi-compound mixtures often contain isomeric compounds which have similar mass spectra and sometimes cannot be unambiguously identified by library search alone. Retention indices can help with confirmation of identification if they are reproducible. Using perdeuterated n-alkanes as a reference series for calculation of retention indices in GC/MS has a clear benefit because of the distinctive ion trace of m/z 34. Thermal desorption is useful for analysis of volatile organic compounds (VOCs) in air after sampling on appropriate sorbent cartridges. Comparison of indices between three systems, consisting of a thermal desorption unit, a gas chromatograph and a mass spectrometer, showed good agreement for compounds with well-defined peaks, whereas retention times varied.     

Separating invariants and finite reflection groups

A separating algebra is, roughly speaking, a subalgebra of the ring of invariants whose elements distinguish between any two orbits that can be distinguished using invariants. In this paper, we introduce a geometric notion of separating algebra. This allows us to prove that only groups generated by reflections may have polynomial separating algebras, and only groups generated by bireflections may have complete intersection separating algebras.     

New “hyphenated” CPC-HPLC-DAD-MS strategy for simultaneous isolation, analysis and identification of phytochemicals: application to xanthones from Garcinia mangostana

Centrifugal partition chromatography (CPC) coupled online with high-performance liquid chromatography (HPLC) with diode-array detection (DAD) and mass spectrometry (MS) is presented in this work. This strategy offers the possibility to obtain simultaneously CPC fractionation of natural extracts, the HPLC fingerprint of separated fractions and structural information on molecules contained in each fraction. This new approach was applied to the fractionation and purification of xanthones from Garcinia mangostana (Clusiaceae) pericarp. A biphasic solvent system of heptane/ethyl acetate/methanol/water (2:1:2:1, v/v) was used for the CPC separation of 175?mg crude ethanolic extract. The HPLC analysis was conducted with a reversed-phase monolithic column allowing fast and repeatable separation. This combined CPC-HPLC-DAD-MS method led to isolation of 33?mg α-mangostin and 6?mg γ-mangostin at 98?% and 98.5?% purity, respectively, in 140?min. Furthermore, in the same time a total of 16 other xanthones were detected in the extract, and ten of them were identified on the basis of their UV and MS spectra.     

Reactions of Doubly Ionized Benzene with Nitrogen and Water: A Nitrogen‐Mediated Entry into Superacid Chemistry

Even in the highly diluted gas phase, rather than electron transfer the benzene dication C₆H₆²⁺ undergoes association with dinitrogen to form a transient C₆H₆N₂²⁺ dication which is best described as a ring‐protonated phenyl diazonium ion. Isotopic labeling studies, photoionization experiments using synchrotron radiation, and quantum chemical computations fully support the formation of protonated diazonium, which is in turn a prototype species of superacidic chemistry in solution. Additionally, reactions of C₆H₆²⁺ with background water involve the transient formation of diprotonated phenol and, among other things, afford a long‐lived C₆H₆OH₂²⁺ dication, which is attributed to the hydration product of Hogeveen’s elusive pyramidal structure of C₆H₆²⁺, as the global minimum of doubly ionized benzene. Nitrogen is essential for the formation of the C₆H₆OH₂²⁺ dication in that it mediates the formation of the water adduct, while the bimolecular encounter of the C₆H₆²⁺ dication with water only leads to (dissociative) electron transfer.     

Development of a charge-perturbed particle-in-a-sphere model for nanoparticle electronic structure

The complex surface structure of gold-thiolate nanoparticles is known to affect the calculated density functional theory (DFT) excitation spectra. However, as the nanoparticle size increases, it becomes impractical to calculate the excitation spectrum using DFT. In this study, a new method is developed to determine the energy levels of the thiolate-protected gold nanoparticles [Au(25)(SR)(18)](-), Au(102)(SR)(44) and Au(144)(SR)(60). A 3 nm thiolate-protected nanoparticle is also modeled. The particle-in-a-sphere model is used to represent the core while the ligands are treated as point charge perturbations. The electronic structures obtained with this model are qualitatively similar to DFT results. The symmetry of the arrangement of the perturbations around the core plays a major role in determining the splitting of the orbitals. The radius chosen to represent the core also affects the orbital splitting. Increasing the number of perturbations around the core shifts the orbitals to higher energies but does not significantly change the band gaps and orbital splitting as long as the symmetrical arrangement of the perturbations is conserved. This model can be applied to any gold nanoparticle with a spherical core, regardless of its size or the nature of the ligands, at very low computational cost.