Explorative data analysis of two-dimensional electrophoresis gels

Methods for classification of two-dimensional (2-DE) electrophoresis gels based on multivariate data analysis are demonstrated. Two-dimensional gels of ten wheat varieties are analyzed and it is demonstrated how to classify the wheat varieties in two qualities and a method for initial screening of gels is presented. First, an approach is demonstrated in which no prior knowledge of the separated proteins is used. Alignment of the gels followed by a simple transformation of data makes it possible to analyze the gels in an automated explorative manner by principal component analysis, to determine if the gels should be further analyzed. A more detailed approach is done by analyzing spot volume lists by principal components analysis and partial least square regression. The use of spot volume data offers a mean to investigate the spot pattern and link the classified protein patterns to distinct spots on the gels for further investigation. The explorative approach in analysis of 2-D gels makes it possible, in a fast and convenient way, to screen many gels in order to determine the protein patterns that form clusters and could be selected for further examination.     

Structures and cytotoxic properties of sponge-derived bisannulated acridines

A reinvestigation of sponge natural products from additional Indo-Pacific collections of Xestospongiacf. carbonaria and X. cf. exigua has provided further insights on the structures, biological activities, and biosynthetic origin of bisannulated acridines. These alkaloids include one known pyridoacridine, neoamphimedine (2), and three new analogues, 5-methoxyneoamphimedine (4), neoamphimedine Y (5), and neoamphimedine Z (6). A completely new acridine, alpkinidine (7), was also isolated. A disk diffusion soft agar assay, using a panel of five cancer cell lines (solid tumors and leukemias) and two normal cells, was used to evaluate the differential cytotoxicity (solid tumor selectivity) of the sponge semipure extracts and selected compounds including amphimedine (1), 2, 4, and 7. While all four compounds were solid tumor selective, 1 and 2 were the most potent and 4 was the most selective. The rationale used to characterize the new structures is outlined along with the related biosynthetic pathways envisioned to generate 2 and 7.     

Kinetics and mechanism of N2 hydrogenation in bis(cyclopentadienyl) zirconium complexes and dinitrogen functionalization by 1,2-addition of a saturated C-H bond

The rates of hydrogenation of the N2 ligand in the side-on bound dinitrogen compounds, [(eta(5)-C5Me4H)2Zr]2(mu2,eta(2),eta(2)-N2) and [(eta(5)-C5Me5)(eta(5)-C5H2-1,2-Me2-4-R)Zr]2(mu2,eta(2),eta(2)-N2) (R = Me, Ph), to afford the corresponding hydrido zirconocene diazenido complexes have been measured by electronic spectroscopy. Determination of the rate law for the hydrogenation of [(eta(5)-C5Me5)(eta(5)-C5H2-1,2,4-Me3)Zr]2(mu2,eta(2),eta(2)-N2) establishes an overall second-order reaction, first order with respect to each reagent. These data, in combination with a normal, primary kinetic isotope effect of 2.2(1) for H2 versus D2 addition, establish the first H2 addition as the rate-determining step in N2 hydrogenation. Kinetic isotope effects of similar direction and magnitude have also been measured for hydrogenation (deuteration) of the two other zirconocene dinitrogen complexes. Measuring the rate constants for the hydrogenation of [(eta(5)-C5Me5)(eta(5)-C5H2-1,2,4-Me3)Zr]2(mu2,eta(2),eta(2)-N2) over a 40 degrees C temperature range provided activation parameters of deltaH(double dagger) = 8.4(8) kcal/mol and deltaS(double dagger) = -33(4) eu. The entropy of activation is consistent with an ordered four-centered transition structure, where H2 undergoes formal 1,2-addition to a zirconium-nitrogen bond with considerable multiple bond character. Support for this hypothesis stems from the observation of N2 functionalization by C-H activation of a cyclopentadienyl methyl substituent in the mixed ring dinitrogen complexes, [(eta(5)-C5Me5)(eta(5)-C5H2-1,2-Me2-4-R)Zr]2(mu2,eta(2),eta(2)-N2) (R = Me, Ph), to afford cyclometalated zirconocene diazenido derivatives.     

Electroactivity of Nonconjugated Proteins and Peptides. Towards Electroanalysis of All Proteins

Present proteomics and biomedicine require sensitive analytical methods for all proteins. Recent progress in electrochemical analysis of peptides and proteins based on their intrinsic electroactivity is reviewed. Tyrosine and/or tryptophan‐containing proteins are oxidizable at carbon electrodes. At mercury electrodes all peptides and proteins (about 13 peptides and >25 proteins were tested) produce chronopotentiometric peak H at nanomolar concentrations. This peak is sensitive to changes in protein structure. Microliter sample volumes are sufficient for the analysis. Electrochemical methods can be used in studies of nucleic acid‐protein interactions and can be applied in biomedicine. Examples of such applications in neurogenerative diseases and cancer are presented.     

Anil-Synthese. 23. Mitteilung. Über die Herstellung von Styryl- und Stilbenyl-Derivaten des Pyrimidins

Preparation of Styryl and Stilbenyl Derivatives of Pyrimidines 2- and 4-(p-Tolyl)-substituted pyrimidines react with anils of hetero-aromatic aldehydes in the presence of dimethylformamide and potassium hydroxide or potassium t-butoxide to yield the corresponding 2- and 4-[4″-(heteroaryl)stilben-4′-yl]pyrimidines or the 2- and 4-[a-(heteroaryl)-4′-styryl]pyrimidines respectively (‘Anil synthesis’). Furthermore, the Schiff′s bases derived from p-chloroaniline and 4-(pyrimidine-2-yl and 4-yl)benzaldehydes give, with methyl- and with p-tolyl-substituted heterocycles, the corresponding heterocyclic substituted styryl and stilbenyl derivatives. Alkyl-, alkoxy- or phenyl-substituted pyrimidines undergo also the ‘Anil synthesis’.     

Preparation of 4-aryl-1,2,3,4-tetrahydro-3,3-dimethylisoquinolines and 1,2,3,4-tetrahydro-3,3-dimethyl-4-phenylbenz[h]isoquinolines

Synthetic procedures to prepare a number of 4-aryl-1,2,3,4-tetrahydro-3,3-dimethylisoquinolines and their benzo-homogues 3 through a series of intermediates are described. The condensation of α-(1-amino-1-methylethyl)arylmethanols 5 with arylaldehydes 6 gave imino derivatives 7 which on reduction with borohydride gave secondary amines 8 . The treatment of 8 with mineral acids gave the target compounds 3 . Biological activities of 3 are briefly discussed.     

Stereoselective Syntheses of Benz[f]isoindoline-Derivatives by Intramolecular Cycloadditions of Styrenes to Olefins

The N-allyl-N-cinnamyl amide 10 undergoes thermal cyclization to a 2:1-mixture of the trans- and cis-benz(f)isoindolines 11a and 12a . By comparison, the thermolysis of the corresponding bis-cinnamylamide 14 proceeds in a highly stereoselective manner to give the cis-fused[4+2]-adduct 16a . Similarly, the trans-fused stereoisomeric adducts 30a and 31a were obtained with high stereochemical control on heating the N-allyl-N-diphenylallyl amide 28 . The thermal transformations 4 → 5 + 6a and 17 → 18a + 20a show the competitive formation of [2+2]-adducts. An alternative approach to (substituted) benz[f]isoindolines 16 via the all-cis-isomer 24a has been developed. The described structures have been assigned on the basis of spectral evidence, chemical correlations and by X-ray-diffraction study of the isomer 16b . These results illustrate the utility of substituent interactions in order to direct intramolecular cyclo-additions at will towards either endo- or exo-products.     

Rotational spectroscopy and equilibrium structures of S3 and S4

The sulfur molecules thiozone S3 and tetrasulfur S4 have been observed in a supersonic molecular beam in the centimeter-wave band by Fourier transform microwave spectroscopy, and in the millimeter- and submillimeter-wave bands in a low-pressure glow discharge. For S3 over 150 rotational transitions between 10 and 458 GHz were measured, and for S4 a comparable number between 6 and 271 GHz. The spectrum of S3 is reproduced to within the measurement uncertainties by an asymmetric top Hamiltonian with three rotational and 12 centrifugal distortion constants; ten distortion constants, but an additional term to account for very small level shifts caused by interchange tunneling, are required to reproduce to comparable accuracy the spectrum of S4. Empirical equilibrium (r(e)(emp)) structures of S3 and S4 were derived from experimental rotational constants of the normal and sulfur-34 species and vibrational corrections from coupled-cluster theory calculations. Quantum chemical calculations show that interchange tunneling occurs because S4 automerizes through a transition state with D2h symmetry which lies about 500 cm(-1) above the two equivalent C2upsilon minima on the potential energy surface.