A novel mechanism of proton transfer in protonated peptides

The study presents quantum-chemical calculations on proton transfer in protonated N-acetylglycyl-N1-methylglycinamide (AGA) as a short oligopeptide model. All calculations employ the B3LYP functional and the 6-31++G** basis set. Two different mechanisms of proton transfer are discussed. The rate-determining step of the first mechanism exhibits an energy barrier of about 17.7 kcal mol-1, and it is represented by an isomerization of the proton around the double bond of the carbonyl group. The second mechanism is based on the large conformational flexibility of AGA, where all carbonyl oxygens cooperate. The rate-determining step of this mechanism exhibits an energy barrier of only 8.3 kcal mol-1.     

Synthesis of pisiferol revisited; control of stereochemistry in an intramolecular Diels-Alder reaction

Thermolysis of 4(X=H) gives 6a and 6b(X=H) in a ratio of 1:4 whereas 4 (X=SO₂Ph) gives more of the trans-ring junction product 6a(X=SO₂Ph) suitable for the synthesis of pisiferol [ratio 6a : 6b(X=SO₂Ph) = 1.5:1].     

PHOTOINHIBITION OF CHLOROPLAST REACTIONS

Abstract— An attemlpt was made to localize the site of photoinhibition of photosynthesis by measuring the decay of various chloroplast reactions after exposure to very strong light. A11 substrate reductions coupled to oxygen evolution as well as photophosphorylation mediated by PMS, proved equally sensitive to photoinhibition. Reactions involving only the long wave photosystem, such as TPN reduction with ascorbate as electron donor and photooxidation of cytochromec by detergent-treated chloroplasts were sensitive to a lower degree.
Photoinhibition irreversibly annihilated the 'variable' fraction of fluorescence emission —it decreased the steady state yield 2-3 fold and abolished the slow rise of the emission at the onset of illurnination.
It is concluded that the primary site of light inactivation is in, or close to, the trapping centers of the oxygen evolving step of photosynthesis. Pre-illumination leaves these traps in a state capable of draining light from sensitizing pigments but unable to perform useful photochemistry.     

Synthesis of the C(2)-C(13) fragment (the A-B spiroketal unit) of spongistatin 1 (altohyrtin A): use of a common intermediate for the synthesis of both spongistatin spiroketals

[reaction: see text] A convergent synthesis of 14 corresponding to the A-B spiroketal core of spongistatin 1 has been accomplished via an iodo-spiroketalization reaction of glycal 9, which was synthesized in three steps from a late-stage intermediate used in our synthesis of the C-D spiroketal fragment of spongistatin 1. Elaboration of 14 to the A-B spiroketal 15 was accomplished in three steps.     

Anomalous dissociative behavior of the major glycosylated component of the cellulosome of clostridium thermocellum

The cellulosome of Clostridium thermocellum is a highly cohesive multienzyme complex that is capable of completely solubilizing insoluble cellulose. One of the major cellulosomal components, the glycosylated S1 subunit, is believed to play an important structural role and normally migrates in sodium dodecyl sulfate-polyacrylamide gel electrophoresis with an Mr of 210,000. It is shown here that by simply altering the conditions (pH or ionic strength) of the environment prior to electrophoresis, a different migratory profile for S1 emerges, yielding a collection of bands, all of which migrate faster than the parent band. The original electrophoretic behavior of S1 can be reproduced on restoration of the original pH and ionic strength. These results may bear important significance for the physiological role of the S1 subunit in facilitating the observed synergistic action of the other (cellulolytic) components of the cellulosome.     

Toward a robust and general molecular simulation method for computing solid-liquid coexistence

A rigorous and generally applicable method for computing solid-liquid coexistence is presented. The method overcomes some of the technical difficulties associated with other solid-liquid simulation procedures and can be implemented within either a molecular dynamics or Monte Carlo framework. The method consists of three steps: First, relative Gibbs free energy curves are created for the solid and liquid phases using histogram reweighting. Next, the free energy difference between the solid and liquid phases is evaluated at a single state point by integrating along a pseudosupercritical transformation path that connects the two phases. Using this result, the solid and liquid free energy curves are referenced to a common point, allowing a single coexistence point to be determined. Finally, Gibbs-Duhem integration is used to determine the full coexistence curve. To evaluate its utility, this method is applied to the Lennard-Jones and NaCl systems. Results for solid-liquid coexistence agree with previous calculations for these systems. In addition, it is shown that the NaCl model does not correctly describe solid-liquid coexistence at high pressures. An analysis of the accuracy of the method indicates that the results are most sensitive to the transformation free energy calculation.     

Double diastereoselective [3,3]-sigmatropic aza-Claisen rearrangements

Asymmetric [3,3]-sigmatropic aza-Claisen rearrangement of the (Z)-N-allyl-N,O-silylketene aminal of (3S,4E,alphaR)-1-benzyloxy-3-(N-propionyl-N-alpha-methylbenzylamino)hex-4-ene furnishes (2S,3R,4E,alphaR)-N-alpha-methylbenzyl-2,3-dimethyl-7-benzyloxyhept-4-enamide in > 92% d.e.; rearrangement of the diastereomeric (3R,4E,alphaR)-(Z)-N,O-silylketene aminal proceeds with low diastereoselectivity.     

Reactions of Bis(p-methoxyphenyl)trisulfane and Its Oxides with Dimethyldioxirane and (Trifluoromethyl)methyldioxirane

The reactions of dimethyldioxirane and (trifluoromethyl)methyldioxirane with bis(p-methoxyphenyl)trisulfane, its 1-oxide, its 2-oxide, and its 1,1-dioxide derivatives have been investigated. The reactions were followed by careful monitoring of the methoxy region of the (1)H NMR spectra and where possible by doping with authentic samples of the products. The decomposition of labile intermediates and products was investigated. A new mechanism for the rearrangement of a trisulfane 1,3-dioxide to a trisulfane 1,1-dioxide is proposed.     

First soluble M@C60 derivatives provide enhanced access to metallofullerenes and permit in vivo evaluation of Gd@C60[C(COOH)2]10 as a MRI contrast agent

M@C(60) and related endohedral metallofullerenes comprise a significant portion of the metallofullerene yield in the traditional arc synthesis, but their chemistry and potential applications have been largely overlooked because of their sparse solubility. In this work, procedures are described to solublize Gd@C(60) species for the first time by forming the derivative, Gd@C(60)[C(COOCH(2)CH(3))(2)](10), and its hydrolyzed water-soluble form, Gd@C(60)[C(COOH)(2)](10). Imparting water solubility to Gd@C(60) permits its evaluation as a magnetic resonance imaging (MRI) contrast agent. Relaxometry measurements for Gd@C(60)[C(COOH)(2)](10) reveal it to possess a relaxivity (4.6 mM(-1) s(-1) at 20 MHz and 40 degrees C) comparable to that of commercially available Gd(III) chelate-based MRI agents. An in vivo MRI biodistribution study in a rodent model reveals Gd@C(60)[C(COOH)(2)](10) to possess the first non-reticuloendothelial system (RES) localizing behavior for a water-soluble endohedral metallofullerene species, consistent with its lack of intermolecular aggregation in solution as determined by light-scattering measurements. This first derivatization and use of a M@C(60) species suggests new potential for metallofullerene technologies by reducing reliance on the chromatographic purification procedures normally employed for the far less abundant M@C(82) and related endohedrals. The recognition that water-soluble fullerene derivatives can be designed to avoid high levels of RES uptake is an important step toward fullerene-based pharmaceutical development.     

Simultaneous quantification of analytes in quaternary mixtures using dual pulse staircase voltammetry and genetically optimised neural networks

This paper describes the simultaneous quantification of four aliphatic compounds (ethanol, methanol, fructose and glucose) mixed in varying concentrations. The method used employs dual pulse staircase voltammetry (DPSV) to acquire an electrochemical voltammogram from the mixture. An artificial neural network, optimised using an elitist genetic algorithm, is then used to determine the concentration of each individual analyte from the voltammogram. The best average RMS errors achieved when testing with unseen data were 5.03%, 7.72%, 3.29% and 4.00% for maximum analyte concentrations of ethanol, methanol, fructose and glucose respectively. This work represents an important step forward because DPSV data is notoriously difficult to calibrate due to complex electrode-analyte interactions, and had not previous been shown to be amenable to quaternary mixtures.