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81.
Molecular dynamics simulations of double-helical DNA oligomers have been performed to investigate differences in the structure, dynamics, and hydration of F-F and T-T mispairs. Hexamers containing F-F pairs were found to be more dynamic, especially in the region of the mispair itself. This dynamic variability derives from greater flexibility of F-F pairs. The T-T mispairs, on the other hand, were found to be comparatively tightly bound as wobble pairs. The major and minor groove edges of the T-T pairs were observed to be solvated at exposed carbonyl positions by at least one water molecule, while F-F pairs lacked solvating waters. Stacking interactions were nearly identical for T-T and F-F pairs, leading to similar average structures, even though F stacking was more dynamically variable. Solvation differences between F-F and T-T therefore support the steric exclusion model for nucleotide incorporation in DNA replication. Large differences in the orientation of minor groove functional groups, in addition to differences in solvation, further rationalize why F bases present during DNA extension events induce stalls. Two novel nucleotides are proposed to further elucidate minor groove interactions of DNA with polymerase molecules.Electronic Supplementary Material This Material consists of equilibration protocol, plots of center-of-mass stacking, water radial distribution functions, helical parameter dynamics, and dynamics data for a control AT sequence. Supplementary material is available in the online version of this article at Contribution to the Jacopo Tomasi Honorary Issue 相似文献
82.
Boddy CN Hotta K Tse ML Watts RE Khosla C 《Journal of the American Chemical Society》2004,126(24):7436-7437
Engineered biosynthetic pathways provide a powerful method for generating complex molecules. Precursor-directed biosynthesis, which combines chemical synthesis and enzymatic transformations, allows non-native starting materials to be incorporated into biosynthetic pathways. Using this approach, we achieved the production of the anticancer agent epothilone C in Escherichia coli. An E. coli strain was engineered to express the last three modules of the epothilone biosynthetic pathway (epoD-M6, epoE, and epoF) and the substrate required to complement the biosynthetic enzymes was obtained by chemical synthesis. Under high-density cell culture conditions, the E. coli strain processed exogenously fed synthetic substrate into epothilone C at levels comparable to the native host (1 mg/L) and at higher levels than other heterologous hosts. Importantly, this precursor-directed approach will allow chemical modifications to be introduced into the polyketide backbone and may ultimately provide access to epothilone analogues with improved pharmacological properties in quantities sufficient for clinical development. 相似文献
83.
Limited land and insufficient technicians to operate a wastewater treatment system are main restrictions for many factories.
Therefore, an ideal wastewater treatment method for a small or land-limited factory must possess merits such as high performance
efficiency, high organic loading rate, little odor, simple operation, easy maintenance, and little land required (simultaneously).
An entrapment technique to immobilize mixed microorganisms to treat organic wastewater, which was developed in the present
work, possesses these characteristics. This project was done on a laboratory scale. The microorganisms were activated sludge
(an undefined mixture of microorganisms obtained directly from a domestic wastewater treatment plan) and the mixed microorganisms
were immobilized in cellulose triacetate by means of an entrapment technique to treat organic wastewater from food industry.
After wastewater was treated by this system, the SCOD (soluble COD) removal efficiency of 81% evaluated samples exceeded 80%
in 1.5 ± 0.9 g SCOD/L/d of the volumetric loading rate and 7–10 h for the hydraulic retention time. This wastewater treatment
method can be applied to other organic industrial wastewater. 相似文献
84.
James J. Gallagher Edward K. Chess Saleh M. Arghestani Michael L. Gross 《Journal of mass spectrometry : JMS》1983,18(3):118-126
Mechanisms for decomposition of 1- and 2-phenyltetralins were investigated using low resolution mass spectrometry and metastable ion techniques. Four primary decompositions were observed for 1-phenyltetralin radical cations: (1) the loss of C6H6 via a 1,4-elimination; (2) the elimination of ethene via competing losses from carbons 3 + 4 and carbons 2 + 3; (3) the loss of C8H8, probably through a stepwise Diels-Alder cycloreversion to expel styrene; and (4) the loss of methyl radical involving carbon 2 and possibly carbon 4. Three major decompositions were observed for 2-phenyltetralin radical cations: (1) the loss of C8H8, possibly through a Diels-Alder cycloreversion to expel styrene; (2) the loss of C6H6 via a 1,3 elimination; and (3) the loss of methyl radical from carbon 1. Various exchange reactions occur prior to these losses, but they proved to be incomplete even for metastable ions. 相似文献
85.
Krystyna Holderna-Natkaniec Ireneusz Natkaniec Weronika Kasperkowiak Elzbieta Sciesinska Jacek Sciesinski Edward Mikuli 《Journal of Molecular Structure》2006,790(1-3):94-113
FTIR and IINS spectra of 6-Furfurylaminopurine (6-FAP) and 6-Benzylaminopurine (6-BAP) taken at different temperatures have been analysed and compared with the spectra calculated by the ab initio DFT/B3LYP method and the semiempirical PM3 method in the isolated molecule approximation, for the tautomers N3-H, N7-H and N9-H, and dimers with hydrogen bonds. For 6-FAP the best agreement between the calculated and experimental (at 20 K) spectra has been found for the N9-H tautomer, whose structure was established by X-ray diffraction. For 6-BAP the analogous agreement for the N9-H tautomer structure has been poor and much better for the N7-H tautomer. The vibrational spectra calculated for dimers of the molecules studied involved in hydrogen bonds, permitted also an interpretation of the bands whose positions and FWHM in the FTIR spectra changed with temperature. 相似文献
86.
A method of analysing steady-state fluorescence quenching in compartmentalized systems is proposed which allows the evaluation of partition and binding constants where both association processes occur simultaneosly. The number of binding sites is shown to be dependent on the nature of the quencher. 相似文献
87.
7-Benz[c] acridinemethanols as tetracyclic analogs of the 2-phenyl-4-quinolinemethanol antimalarials
Andre Rosowsky Michael Chaykovsky Sandra A. Yeager Richard A. St. Amand May Lin Edward J. Modest 《Journal of heterocyclic chemistry》1971,8(5):809-820
A series of new 7-benz[c]acridinemethanols and 5,6-dihydro-7-benz[c]acridinemethanols was prepared as rigid, tetracyclic analogs of the antimalarial 2-phenyl-4-quinolinemethanols. Condensation of 5,7-dichloroisatin with 6-chloro-, 7-chloro-, and 6,7-dichloro-1-tetralone furnished halogenated 5,6-dihydro-7-benz[c]acridinecarboxylic acids, which were transformed into the corresponding acid chlorides, acyl malonates, α-bromomethyl ketones, and epoxides. Fully aromatic members of the series obtained via dehydrogenation of the 5,6-dihydro acids were likewise converted into epoxides via the acylmalonate route. Although all the epoxides studied proved to be exceptionally resistant to ring-opening by di-n-butylamine, probably on account of steric effects, they could be cleaved readily with piperidine or morpholine. Nmr spectra of the resulting amino alcohols suggest that these compounds exist in a single preferred conformation stabilized by internal O-H····N hydrogen bonding, and that free rotation about the side chain C-C bond does not occur at room temperature. 相似文献
88.
89.
Lithio-1,3-diarylformamidines undergo reaction with the monomeric and dimeric carbonyl chlorides of manganese and rhenium, [M(CO)5Cl] and [M(CO)4Cl2] to yield respectively the carbamoyl-formamidino [M(CO)4-CON(R)CHNR] and the formamidino [M(CO)4RNCHNR] types of complex. The carbamoyl complexes undergo decarbonylation to produce the formamidino complexes in low yield. 相似文献
90.
This study compared H2S adsorption kinetic parameters in both grain adsorption and column adsorption systems. Results indicated that when the nondimensional mass transfer parameter for adsorption column design was included, the axial dispersion (Pe > 1, < 1) and external film resistance (B 1) could be neglected, the fluid viscosity effect was small (Sc = 0.76), and the adsorbate affinity was fine (). Surface and pore diffusion controlled the adsorbent and fluid mass transfer. In addition, spent activated carbon could be treated by a thermal process and then impregnated with NaOH. After the pretreatment, the spent activated carbon could be used for H2S adsorption. Furthermore, we also propose that the H2S adsorption reaction on the carbon is due to the formation of sulfur crystals. 相似文献