Measurements of coeluting unlabeled and C-labeled polychlorinated biphenyl congeners with partially overlapping fragment profiles using a tandem mass spectrometry

¹³C-labeled compounds are often employed as surrogate or internal standards to monitor the performance of extraction and instrumental analysis procedures for their unlabeled counterparts. However, labeled and unlabeled counterparts most often coelute chromatographically with overlapping mass ion fragments, posing a challenge to the accurate quantification of these compounds. In the present study, an analytical scheme, using coeluting unlabeled and ¹³C-labeled polychlorinated biphenyl (PCB) congeners as the model compounds, was developed with a low-resolution tandem mass spectrometer (MS/MS) to determine the appropriate ranges of PCB congener concentrations that satisfy the no-interference condition. Interferences from unlabeled PCBs to quantitation of labeled counterparts could be minimized when ¹³C-labeled PCB congeners were quantified in the MS/MS mode within a certain concentration range. In addition, good agreements between the measured and theoretically predicted quantitation errors were observed for all labeled PCB congeners except PCB 180. The exception with labeled PCB 180 was mainly attributed to the occurrence of instrumental analytical uncertainty, as analytical error was also observed with absence of unlabeled PCB 180. These results indicate that MS/MS techniques can serve as a useful tool to minimize interferences with quantitation of isotopically labeled compounds from their unlabeled counterparts, which possess partially overlapping ion fragment profiles.     

On the <Emphasis Type="Italic">k</Emphasis>-gamma <Emphasis Type="Italic">q</Emphasis>-distribution

We provide combinatorial as well as probabilistic interpretations for the q-analogue of the Pochhammer k-symbol introduced by Díaz and Teruel. We introduce q-analogues of the Mellin transform in order to study the q-analogue of the k-gamma distribution.     

A magnetic bead‐based serum proteomic fingerprinting method for parallel analytical analysis and micropreparative purification

ProteinChip surface‐enhanced laser desorption/ionization technology and magnetic beads‐based ClinProt system are commonly used for semi‐quantitative profiling of plasma proteome in biomarker discovery. Unfortunately, the proteins/peptides detected by MS are non‐recoverable. To obtain the protein identity of a MS peak, additional time‐consuming and material‐consuming purification steps have to be done. In this study, we developed a magnetic beads‐based proteomic fingerprinting method that allowed semi‐quantitative proteomic profiling and micropreparative purification of the profiled proteins in parallel. The use of different chromatographic magnetic beads allowed us to obtain different proteomic profiles, which were comparable to those obtained by the ProteinChip surface‐enhanced laser desorption/ionization technology. Our assays were semi‐quantitative. The normalized peak intensity was proportional to concentration measured by immunoassay. Both intra‐assay and inter‐assay coefficients of variation of the normalized peak intensities were in the range of 4–30%. Our method only required 2 μL of serum or plasma for generating enough proteins for semi‐quantitative profiling by MALDI‐TOF‐MS as well as for gel electrophoresis and subsequent protein identification. The protein peaks and corresponding gel spots could be easily matched by comparing their intensities and masses. Because of its high efficiency and reproducibility, our method has great potentials in clinical research, especially in biomarker discovery.     

Straightforward entry to libraries of diversely substituted azinones by a consecutive aza-Michael/palladium-catalyzed functionalization strategy

A highly divergent, flexible, and conceptually simple sequence allowing the parallel solution-phase assembly of functionalized azinone libraries has been developed in a one-pot consecutive fashion. Structural decoration of in situ-generated heterocyclic aza-Michael adducts AB was accomplished by exploiting the diversity potential of Heck, Suzuki, Sonogashira, and Stille reactions.     

On Ranges and Moore�CPenrose Inverses Related to Matrix Carath��odory and Schur Functions

By Cayley transformation, there is an interplay between matrix-valued Carathéodory and Schur functions in the unit disk. One of the main aims of the paper is to study this interplay with a view to the fact that the matrix function given by the values of a Carathéodory function via Moore–Penrose inverses is also a Carathéodory function. In doing so, we also analyze ranges and null spaces of the values of the matrix function in question and get some results of independence concerning the concretely chosen point of the domain.     

Differential synthetic aperture ladar

We report a differential synthetic aperture ladar concept that relaxes platform and laser requirements compared with those for conventional synthetic aperture ladar. Line-of-sight translation-vibration constraints are reduced by several orders of magnitude, while laser frequency stability is typically relaxed by an order of magnitude. The technique is most advantageous for shorter laser wavelengths, ultraviolet to mid-infrared. Analytical and modeling results, including the effect of speckle and atmospheric turbulence, are presented.     

Covariance of stochastic integrals with respect to fractional Brownian motion

We find an explicit expression for the cross-covariance between stochastic integral processes with respect to a $d$-dimensional fractional Brownian motion (fBm) $B_t$ with Hurst parameter $H>\raisebox{1ex}{$1$}\!\left/ \!\raisebox{-1ex}{$2$}\right.$, where the integrands are vector fields applied to $B_t$. It provides, for example, a direct alternative proof of Y. Hu and D. Nualart’s result that the stochastic integral component in the fractional Bessel process decomposition is not itself a fractional Brownian motion.     

Crosslinking of PVA and glutaraldehyde in water monitored by viscosity and pulse field gradient NMR: a comparative study

The crosslinking of poly(vinyl alcohol) (PVA) with glutaraldehyde at 80 °C was characterized by viscosity and pulse field gradient (PFG) nuclear magnetic resonance (NMR) techniques. NMR signified an initial dormant period of approximately 6 hr, in which the self‐diffusion coefficient of PVA was found to be constant and independent of time. During the next 7 hr (the “primary” gel period), this induction period was succeeded by a fast decay of the self‐diffusion coefficient of rate (9.13 ± 0.45) × 10⁻⁵ sec⁻¹ followed by a slower decay rate of (3.22 ± 0.30) × 10⁻⁵ sec⁻¹ (the “secondary” gel period). The viscosity of the solution showed the same time behavior, i.e. an initial dormant period (∼ 6 hrs), followed by a fast increase of the viscosity for the next 7 –8 hr. During the “secondary” gel regime, the viscosity became too large to be reliably determined. However, within the time regime where both techniques produced reliable data, they gave identical information regarding the kinetics of the gel process, suggesting that PFG NMR enables in situ monitoring of gelation within porous materials (for instance sandstone). Copyright © 2000 John Wiley & Sons, Ltd.     

Analysis of urinary nucleosides. III. Identification of 5'-deoxycytidine in urine of a patient with head and neck cancer

Modified nucleosides in the urine have been postulated to be diagnostic indices of disease, particularly of cancer. The urine of a patient with terminal head and neck cancer has been found to contain a modified nucleoside with a protonated molecule of m/z 228. By means of high-performance liquid chromatography/ion trap mass spectrometry (HPLC/ITMS) and capillary liquid chromatography/triple quadruple mass spectrometry (CapLC/TQMS) we have identified the compound as 5'-deoxycytidine. This is the first report of 5'-deoxycytidine in man: in addition to the elucidation of its structure, its possible origins and the potential significance of its occurrence are discussed.     

X‐Ray Crystallography and Free Energy Calculations Reveal the Binding Mechanism of A2A Adenosine Receptor Antagonists

We present a robust protocol based on iterations of free energy perturbation (FEP) calculations, chemical synthesis, biophysical mapping and X‐ray crystallography to reveal the binding mode of an antagonist series to the A_2A adenosine receptor (AR). Eight A_2AAR binding site mutations from biophysical mapping experiments were initially analyzed with sidechain FEP simulations, performed on alternate binding modes. The results distinctively supported one binding mode, which was subsequently used to design new chromone derivatives. Their affinities for the A_2AAR were experimentally determined and investigated through a cycle of ligand‐FEP calculations, validating the binding orientation of the different chemical substituents proposed. Subsequent X‐ray crystallography of the A_2AAR with a low and a high affinity chromone derivative confirmed the predicted binding orientation. The new molecules and structures here reported were driven by free energy calculations, and provide new insights on antagonist binding to the A_2AAR, an emerging target in immuno‐oncology.