Predicting hydration Gibbs energies of alkyl-aromatics using molecular simulation: a comparison of current force fields and the development of a new parameter set for accurate solvation data

The Gibbs energy of hydration is an important quantity to understand the molecular behavior in aqueous systems at constant temperature and pressure. In this work we review the performance of some popular force fields, namely TraPPE, OPLS-AA and Gromos, in reproducing the experimental Gibbs energies of hydration of several alkyl-aromatic compounds--benzene, mono-, di- and tri-substituted alkylbenzenes--using molecular simulation techniques. In the second part of the paper, we report a new model that is able to improve such hydration energy predictions, based on Lennard Jones parameters from the recent TraPPE-EH force field and atomic partial charges obtained from natural population analysis of density functional theory calculations. We apply a scaling factor determined by fitting the experimental hydration energy of only two solutes, and then present a simple rule to generate atomic partial charges for different substituted alkyl-aromatics. This rule has the added advantages of eliminating the unnecessary assumption of fixed charge on every substituted carbon atom and providing a simple guideline for extrapolating the charge assignment to any multi-substituted alkyl-aromatic molecule. The point charges derived here yield excellent predictions of experimental Gibbs energies of hydration, with an overall absolute average deviation of less than 0.6 kJ mol(-1). This new parameter set can also give good predictive performance for other thermodynamic properties and liquid structural information.     

Enzymatic Basis of “Hybridity” in Thiomarinol Biosynthesis

Thiomarinol is a naturally occurring double‐headed antibiotic that is highly potent against methicillin‐resistant Staphylococcus aureus. Its structure comprises two antimicrobial subcomponents, pseudomonic acid analogue and holothin, linked by an amide bond. TmlU was thought to be the sole enzyme responsible for this amide‐bond formation. In contrast to this idea, we show that TmlU acts as a CoA ligase that activates pseudomonic acid as a thioester that is processed by the acetyltransferase HolE to catalyze the amidation. TmlU prefers complex acyl acids as substrates, whereas HolE is relatively promiscuous, accepting a range of acyl‐CoA and amine substrates. Our results provide detailed biochemical information on thiomarinol biosynthesis, and evolutionary insight regarding how the pseudomonic acid and holothin pathways converge to generate this potent hybrid antibiotic. This work also demonstrates the potential of TmlU/HolE enzymes as engineering tools to generate new “hybrid” molecules.     

Voltammetric Determination of Neonicotinoid Pesticides at Disposable Screen‐Printed Sensors Featuring a Sputtered Bismuth Electrode

This work reports the determination of 5 neonicotinoid pesticides (Clothianidin, Imidacloprid, Thiamethoxam, Nitenpyram and Dinotefuran) in water samples by cathodic differential pulse (DP) voltammetry at screen‐printed disposable sensors featuring a sputtered bismuth thick‐film working electrode, a Ag reference electrode and a carbon counter electrode. The performance of the bismuth thick‐film electrodes was compared to that of a home‐made bismuth thin‐film electrode and a bismuth‐bulk electrode. The electrodes were further characterized by electrochemical and optical techniques. The effect of the pH of the supporting electrolyte on the DP reduction currents of the 5 pesticides was studied. The limits of quantification (LOQs) in 4 water matrices (distilled water, tap water, mineral water and surface water) were in the range 0.76 to 2.10 mg L^?1 but severe matrix effects were observed in the analysis of mineral and, especially, surface water samples. Using a solid‐phase extraction (SPE) procedure using Lichrolut EN cartridges and elution with methanol, the matrix effects were substantially reduced and the LOQs were in the range 9 to 17 µg L^?1_. The recoveries of surface water samples spiked with the 5 target neonicotinoids at two concentration levels (20 and 50 µg L^?1) were in the range 89 to 109 % and the % relative standard deviations ranged from 4.3 to 7.2 %.     

Microwave and THz sensing using slab-pair-based metamaterials

In this work the sensing capability of an artificial magnetic metamaterial based on pairs of metal slabs is demonstrated, both theoretically and experimentally, in the microwave regime. The demonstration is based on transmission measurements and simulations monitoring the shift of the magnetic resonance frequency as one changes a thin dielectric layer placed between the slabs of the pairs. Strong dependence of the magnetic resonance frequency on both the permittivity and the thickness of the dielectric layer under detection was observed. The sensitivity to the dielectrics′ permittivity (ε) is larger for dielectrics of low ε values, which makes the approach suitable for sensing organic materials also in the THz regime. The capability of our approach for THz sensing is also demonstrated through simulations.