Detection of heteroplasmy in individual mitochondrial particles

Mitochondrial DNA (mtDNA) mutations have been associated with disease and aging. Since each cell has thousands of mtDNA copies, clustered into nucleoids of five to ten mtDNA molecules each, determining the effects of a given mtDNA mutation and their connection with disease phenotype is not straightforward. It has been postulated that heteroplasmy (coexistence of mutated and wild-type DNA) follows simple probability rules dictated by the random distribution of mtDNA molecules at the nucleoid level. This model has been used to explain how mutation levels correlate with the onset of disease phenotype and loss of cellular function. Nonetheless, experimental evidence of heteroplasmy at the nucleoid level is scarce. Here, we report a new method to determine heteroplasmy of individual mitochondrial particles containing one or more nucleoids. The method uses capillary cytometry with laser-induced fluorescence detection to detect individual mitochondrial particles stained with PicoGreen, which makes it possible to quantify the mtDNA copy number of each particle. After detection, one or more particles are collected into polymerase chain reaction (PCR) wells and then subjected to real-time multiplexed PCR amplification. This PCR strategy is suitable to obtain the relative abundance of mutated and wild-type mtDNA. The results obtained here indicate that individual mitochondrial particles and nucleoids contained within these particles are not heteroplasmic. The results presented here suggest that current models of mtDNA segregation and distribution (i.e., heteroplasmic nucleoids) need further consideration.     

Measurement at the field scale of soil δ13C and δ15N under improved grassland

Variations in natural abundance of carbon (C) and nitrogen (N) stable isotopes are widely used as tools for many aspects of scientific research. By examining variations in the ratios of heavy to light stable isotopes, information can be obtained as to what physical, chemical and biological processes may be occurring. The spatial heterogeneity of soil δ¹⁵N‐ and δ¹³C‐values across a range of scales and under different land use have been described by a number of researchers and the natural abundances of the C and N stable isotopes in soils have been found to be correlated with many factors including hydrology, topography, land use, vegetation cover and climate. In this study the Latin square sampling +1 (LSS+1) sampling method was compared with a simple grid sampling approach for δ¹³C and δ¹⁵N measurement at the field scale. A set of 144 samples was collected and analysed for δ¹⁵N and δ¹³C from a 12 × 12 grid (in a 1 ha improved grassland field in south‐west England). The dimension of each cell of the grid was approximately 11 × 6 m. The 12 × 12 grid was divided into four 6 × 6 grids and the LSS+1 sampling technique was applied to these and the main 12 × 12 grid for a comparison of sample means and variation. The LSS+1 means from the 12 × 12 grid and the four 6 × 6 grids compared well with the overall grid mean because of the low variation within the field. The LSS+1 strategy (13 samples) generated representative samples from the 12 × 12 grid, and hence would be an acceptable method for sampling similar plots for the measurement of mean isotopic composition. Copyright © 2010 John Wiley & Sons, Ltd.     

Logarithmic asymptotics for a single-server processing distinguishable sources

We consider a single-server first-in-first-out queue fed by a finite number of distinct sources of jobs. For a large class of short-range dependent and light-tailed distributed job processes, using functional large deviation techniques we prove a large deviation principle and logarithmic asymptotics for the joint waiting time and queue lengths distribution. We identify the paths that are most likely to lead to the rare events of large waiting times and long queue lengths. A number of examples are presented to illustrate salient features of the results.      

Encapsulation of organotin compounds in metal acetate glasses

Triorganotin halides, oxides and sulphides can be dissolved in molten, mixed-metal acetates at ca 140–160°C without decomposition; quenching provides glasses into which are encapsulated the organotin species. Halide/acetate and oxide/acetate, but not sulphide/acetate, exchanges occur in the melt. Only partial exchange was found for hindered trineophyl tin chloride [(PhCMe₂CH₂)₃SnCl], in contrast to the complete exchanges observed for the butyl (Bu), phenyl (Ph) and cyclohexyl (Cy) analogues. Complete oxide/acetate exchange was found for (Bu₃Sn)₂O, partial exchange occurred for (Cy₃Sn)₂O, whilst no exchange resulted with bis(trineophyltin) oxide or (Ph₃Sn)₂O. Tin–tin bonds (e.g. as in Ph₃SnSnPh₃) and carbon–tin bonds (even the allyl–Sn bond in Bu₃SnCH₂CH?CH₂) are not affected. The acetate glasses dissolve in aqueous media with release of the organotin species and they have potential as slow-release systems which is currently being investigated.     

Supramolecular Fluorescent Nanoparticles Constructed via Multiple Non‐Covalent Interactions for the Detection of Hydrogen Peroxide in Cancer Cells

Overabundance of hydrogen peroxide originating from environmental stress and/or genetic mutation can lead to pathological conditions. Thus, the highly sensitive detection of H₂O₂ is important. Herein, supramolecular fluorescent nanoparticles self‐assembled from fluorescein isothiocyanate modified β‐cyclodextrin (FITC‐β‐CD)/rhodamine B modified ferrocene (Fc‐RB) amphiphile were prepared through host–guest interaction between FITC‐β‐CD host and Fc‐RB guest for H₂O₂ detection in cancer cells. The self‐assembled nanoparticles based on a combination of multiple non‐covalent interactions in aqueous medium showed high sensitivity to H₂O₂ while maintaining stability under physiological condition. Owing to the fluorescence resonance energy transfer (FRET) effect, addition of H₂O₂ led to obvious fluorescence change of nanoparticles from red (RB) to green (FITC) in fluorescent experiments. In vitro study showed the fluorescent nanoparticles could be efficiently internalized by cancer cells and then disrupted by endogenous H₂O₂, accompanying with FRET from “on” to “off”. These supramolecular fluorescent nanoparticles constructed via multiple non‐covalent interactions are expected to have potential applications in diagnosis and imaging of diseases caused by oxidative stresses.     

Oxidic glasses as hosts for migrating metal ions

The results of experiments where Tl⁺ and Pb²⁺ ions are electrolysed into a sodium borate glass (35 mol% Na₂O and 50 °C) are brought up to date in order to take into account recent developments in the chemistry of borate glasses. It is first necessary to consider the unique chemistry of the oxide(-II) species in terms of its electronegativity, electronic polarisability and acid–base properties, and the significant relationship between these is discussed. It is described how the Lewis basicity of oxidic materials such as glasses can be expressed quantitatively on the optical basicity scale and how determinations are made by various experimental methods. These methods include optical spectroscopy of ‘probe’ ions such as Tl⁺ or Pb²⁺, measurement of electronic polarisability and far-infrared spectroscopic ‘rattling’ frequencies of constituent metal ions. When Pb²⁺ ions are electrolysed into the sodium borate glass, it is found that there is migration of Na⁺ ions away from and of O^2? ions towards the (lead) anode with formation of PbO. There is almost complete depletion of Na₂O in the anode region so that the composition of the glass approximates to B₂O₃. A similar process occurs to a limited degree in the case of thallium, but the Tl⁺ ions are able to penetrate more deeply into the glass. Their ultraviolet ¹S₀?→?³P₁ frequency indicates that the sites they occupy have much greater basicity than the bulk glass. The two-site model of Kamitsos proposes that in borate glasses, there are higher and lower basicity sites, and the measured optical basicity of Tl⁺ indicates occupation of the higher sites. Since it has been shown that BO₄ groups in the glass are weakly basic, it is unlikely that they are involved in the higher sites. It is discussed how the higher site basicity implies greater covalency in the interaction of the Tl⁺ ion with the oxide(-II)s that constitute the pathway, and it is suggested that this is an important factor in the electromigration process.     

A mathematical model for blade coating of a nematic liquid crystal

The standard industrial process of blade-coating is now being used to produce new liquid crystal displays (LCDs) in which a liquid crystal and optical layers are coated onto a substrate. Motivated by this new LCD manufacturing process, we use the Ericksen-Leslie equations to develop a simple mathematical model for blade coating of a nematic liquid crystal. The direction and uniformity of the director are important factors for the performance of the displays, particularly when this alignment is 'frozen in' within optical layers. For this reason we investigate the flow and director within a liquid crystal film both after emerging from the region under a blade (the so-called 'drag-out' problem) and before entering the region under a blade (the so-called 'drag-in' problem). We restrict our attention to thin films and small director angles, and we study two particular cases in which either orientational elasticity effects or flow effects dominate the alignment of the liquid crystal. We find that there is a unique solution of the drag-out problem, whereas there may be multiple solutions of the drag-in problem. When orientational elasticity effects dominate we obtain a simple analytical solution for the director. When flow effects dominate we find that the director is uniform in the bulk of the liquid crystal, which exhibits thin orientational boundary layers near the substrate and the free surface, within which the director orientation changes rapidly from its prescribed boundary value to the flow alignment angle. These boundary layers may be potential locations for the nucleation of defects.     

Energy gaps,polarisation and partial metallic valence

The metallic character of chemical bonding, for compounds that are inadequately described in a solely “ionic/covalent” framework, is discussed from the point of view of band gap electronegativity, χ¹, and polarisation theory. With existing data for binary compounds, the plot of $\text{χ}{}^1\text{(}\text{anion}\text{)?χ}{}^1\text{(}\text{cation}\text{)}\text{vs}\text{(1?R|V)}$, where R is the molar refractivity and V the molar volume (R|V being calculated from refractive index), shows fairly good correlation and appears to distinguish semiconductors from insulators.     

Non-planar smoulder propagation governed by diffusion

The steady propagation of a thin smouldering front in a half-spacehas been considered. A suitable coordinate transformation hasallowed the region near the leading edge of the front to beexamined for both a maintained planar surface and with surfacecollapse due to material shrinkage. The change in the oxidizerconcentration for a small increment in the propagation speedfor large time and surface collapse has been determined. Theinfluence of two types of nonlinear diffusion on the shape ofthe smouldering front has been found; other cases can be dealtwith in a similar manner.