High-Resolution Infrared Synchrotron Investigation of (HCN)2 and a Semi-Experimental Determination of the Dissociation Energy D0

The high-resolution infrared absorption spectrum of the donor bending fundamental band ν of the homodimer (HCN)₂ has been collected by long-path static gas-phase Fourier transform spectroscopy at 207 K employing the highly brilliant 2.75 GeV electron storage ring source at Synchrotron SOLEIL. The rovibrational structure of the ν transition has the typical appearance of a perpendicular type band associated with a Σ–Π transition for a linear polyatomic molecule. The total number of 100 assigned transitions are fitted employing a standard semi-rigid linear molecule Hamiltonian, providing the band origin ν₀ of 779.05182(50) cm⁻¹ together with spectroscopic parameters for the degenerate excited state. This band origin, blue-shifted by 67.15 cm⁻¹ relative to the HCN monomer, provides the final significant contribution to the change of intra-molecular vibrational zero-point energy upon HCN dimerization. The combination with the vibrational zero-point energy contribution determined recently for the class of large-amplitude inter-molecular fundamental transitions then enables a complete determination of the total change of vibrational zero-point energy of 3.35±0.30 kJ mol⁻¹. The new spectroscopic findings together with previously reported benchmark CCSDT(Q)/CBS electronic energies [Hoobler et al. ChemPhysChem. 19 , 3257–3265 (2018)] provide the best semi-experimental estimate of 16.48±0.30 kJ mol⁻¹ for the dissociation energy D₀ of this prototypical homodimer.     

Proton-ionizable crown compounds. 12. Proton-Coupled selective membrane transport of Li+ using a proton-ionizable pyridono macrocycle

The macrocycle-mediated fluxes of several alkali metal cations have been determined in a H₂O-CH₂Cl₂-H₂O liquid membrane system. Water-insoluble proton-ionizable macrocycles of the pyridono type were used. The proton-ionizable feature allows the coupling of cation transport to reverse H⁺ transport. This feature offers promise for the effective separation and/or concentration of alkali metal ions with the metal transport being driven by a pH gradient. A counter anion in the source phase is not co-transported. The desired separation of a particular metal ion involves its selective complexation with the macrocycle, subsequent extraction from the aqueous phase to the organic phase, and exchange for H⁺ at the organic phase-receiving phase interface. Factors affecting transport which were studied include ring size, source phase pH, and receiving phase pH. Lithium was transported at a rate higher than that of the other alkali metals in both single and competitive systems using a 15-crown-5 pyridono carrier.     

Synthesis,characterization, and properties of novel aromatic bispropenyl ethers

Aromatic bispropenyl ethers are a new class of highly reactive thermosetting monomers that have been prepared and characterized. Two synthetic routes to their preparation have been developed. The first of these involves the base-catalyzed isomerization of bisallyl ether precursors that gives predominantly the Z bispropenyl ether isomers. The second method employs tris(triphenylphosphine)ruthenium(II) dichloride as an isomerization catalyst and produces predominantly the E isomers. Using these methods, a number of bispropenyl ether monomers containing different aromatic groups have been synthesized. The cationic polymerization of these novel monomers to give crosslinked network polymers using diaryliodonium salts as photo and thermal initiators has been studied.     

The crystal and molecular structure of tris[(triphenylstannyl)methyl]methane

The title compound, C₅₈H₅₂Sn₃, belongs to the triclinic space group P$\text{1}$, with a 10.165, b 13.365, c 18.670 Å, α 96.28, β 93.88, γ 103.15°, V = 2443.8 ų, f_w = 1105.1, Z = 2, D_calc 1.501 g cm^?3, m.p. 206.5–208°C, λ(Mo-K_$\text{α}$) 0.71069 Å. The structure was refined on 2684 nonzero reflections to an R factor of 0.044. The crystal contains molecules in which the (SnCH₂)₃CH core possesses an approximate C₃ symmetry. The three SnC(H₂) bonds are gauche to the C(4)-H bond. Repulsive interactions involving the bulky Ph₃Sn substituents lead to large SnC(H₂)C(H) angles (av. 117.3°), whereas the C(H₂)C(H)C(H₂) angles at the tertiary carbon average 111.3°. Little distortion of the Ph₃Sn groups themselves is present, since the PhSnPh angles (av. 109.8°) are almost equal to the C(H₂)SnPh angles (av. 109.9°). The molecule as a whole has no symmetry because the aromatic rings in the three Ph₃Sn groups have different orientations. The phenyl groups create a pocket in the middle of the molecule which encloses and shields the tertiary hydrogen atom. The resulting inaccessibility of this hydrogen accounts in part for the low reactivity of the title compound in redox reactions.     

A structure-based design approach for the identification of novel inhibitors: application to an alanine racemase

We report a new structure-based strategy for the identification of novel inhibitors. This approach has been applied to Bacillus stearothermophilus alanine racemase (AlaR), an enzyme implicated in the biosynthesis of the bacterial cell wall. The enzyme catalyzes the racemization of l- and d-alanine using pyridoxal 5-phosphate (PLP) as a cofactor. The restriction of AlaR to bacteria and some fungi and the absolute requirement for d-alanine in peptidoglycan biosynthesis make alanine racemase a suitable target for drug design. Unfortunately, known inhibitors of alanine racemase are not specific and inhibit the activity of other PLP-dependent enzymes, leading to neurological and other side effects.This article describes the development of a receptor-based pharmacophore model for AlaR, taking into account receptor flexibility (i.e. a `dynamic' pharmacophore model). In order to accomplish this, molecular dynamics (MD) simulations were performed on the full AlaR dimer from Bacillus stearothermophilus (PDB entry, 1sft) with a d-alanine molecule in one active site and the non-covalent inhibitor, propionate, in the second active site of this homodimer. The basic strategy followed in this study was to utilize conformations of the protein obtained during MD simulations to generate a dynamic pharmacophore model using the property mapping capability of the LigBuilder program. Compounds from the Available Chemicals Directory that fit the pharmacophore model were identified and have been submitted for experimental testing.The approach described here can be used as a valuable tool for the design of novel inhibitors of other biomolecular targets.     

A window fourier domain search system

A search system is presented that utilizes Fourier domain data. This system removes dominating features from the infrared absorbance data, transforms the data into the Fourier domain and performs a complete library search. The actual matching algorithm is very simple and excellent search results were attained using 16 cm^–1 resolution infrared absorbance spectra before transformation. This method can be used to distinguish very similar spectra that cannot be distinguished by many other search methods.     

Mechanism of the grafting of organosilanes on mineral surfaces

Summary The grafting of minerals by alkenylchlorosilanes leads to organomineral derivatives which are superficially covered by unsaturated organic groups. These groups may be of value when the grafted mineral is used as a reinforcing agent in a polymeric matrix. In this case, the unsaturated grafted groups copolymerize with an organic monomer to build up a composite material. It is therefore of importance to preserve the unsaturated character of the alkenyl-silane during the grafting reactions. It is shown that in certain synthesis conditions, the hydrochloric acid present in the reaction medium adds to the alkenyl-groups. For instance, in the grafting of methylvinyl-dichlorosilane, this reaction is of minor importance, whereas in the case of allyldimethylchlorosilane, no allyl groups are grafted as such on the mineral surface.

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Zusammenfassung Die Pfropfung von silicatischen Mineralen mit Alkenylchlorosilanen führt zu organischen Derivaten, deren Oberfläche mit ungesättigten organischen Gruppen bedeckt ist. Diese Gruppen können Vorteile bieten, wenn die so behandelten Minerale als Fül-stoffe oder Verstärker in einer Polymermatrix eingesetzt werden. Die ungesättigten Gruppen können miteinem organischen Monomer kopolymerisieren und ein echtes Verbundmaterial bilden. Die Pfropfung muß allerdings so geführt werden, daß der ungesättigte Charakter der Alkenylsilane erhalten bleibt. In der Arbeit werden experimentelle Bedingungen dafür berichtet.

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Part 1: Nature and role of the hydrolysis products of the methylvinyldichlorosilane in the grafting of silicates in hydrochloric acid and isopropanolThis journal 256, 135 (1978).