Coil-stretch Transition of DNA Molecules in Slit-like Confinement

We experimentally investigate the influence of slit-like confinement on the coil-stretch transition of single DNA molecules in a homogeneous planar elongational electric field. We observe a more gradual coil-stretch transition characterized by two distinct critical strain rates for DNA in confinement, different from the unconfined case where a single critical strain rate exists. We postulate that the change in the coil-stretch transition is due to a modified spring law in confinement. We develop a dumbbell model to extract an effective spring law by following the relaxation of an initially stretched DNA. We then use this spring law and kinetic theory modeling to predict the extension and fluctuations of DNA in planar elongational fields. The model predicts that a two-stage coil-stretch transition emerges in confinement, in accord with experimental observations.     

Differentiation between intra-axial metastatic tumor progression and radiation injury following fractionated radiation therapy or stereotactic radiosurgery using MR spectroscopy, perfusion MR imaging or volume progression modeling

Objective

To determine the accuracy of magnetic resonance spectroscopy (MRS), perfusion MR imaging (MRP), or volume modeling in distinguishing tumor progression from radiation injury following radiotherapy for brain metastasis.

Methods

Twenty-six patients with 33 intra-axial metastatic lesions who underwent MRS (n=41) with or without MRP (n=32) after cranial irradiation were retrospectively studied. The final diagnosis was based on histopathology (n=4) or magnetic resonance imaging (MRI) follow-up with clinical correlation (n=29). Cho/Cr (choline/creatinine), Cho/NAA (choline/N-acetylaspartate), Cho/nCho (choline/contralateral normal brain choline) ratios were retrospectively calculated for the multi-voxel MRS. Relative cerebral blood volume (rCBV), relative peak height (rPH) and percentage of signal-intensity recovery (PSR) were also retrospectively derived for the MRPs. Tumor volumes were determined using manual segmentation method and analyzed using different volume progression modeling. Different ratios or models were tested and plotted on the receiver operating characteristic curve (ROC), with their performances quantified as area under the ROC curve (AUC). MRI follow-up time was calculated from the date of initial radiotherapy until the last MRI or the last MRI before surgical diagnosis.

Results

Median MRI follow-up was 16 months (range: 2-33). Thirty percent of lesions (n=10) were determined to be radiation injury; 70% (n=23) were determined to be tumor progression. For the MRS, Cho/nCho had the best performance (AUC of 0.612), and Cho/nCho >1.2 had 33% sensitivity and 100% specificity in predicting tumor progression. For the MRP, rCBV had the best performance (AUC of 0.802), and rCBV >2 had 56% sensitivity and 100% specificity. The best volume model was percent increase (AUC of 0.891); 65% tumor volume increase had 100% sensitivity and 80% specificity.

Conclusion

Cho/nCho of MRS, rCBV of MRP, and percent increase of MRI volume modeling provide the best discrimination of intra-axial metastatic tumor progression from radiation injury for their respective modalities. Cho/nCho and rCBV appear to have high specificities but low sensitivities. In contrast, percent volume increase of 65% can be a highly sensitive and moderately specific predictor for tumor progression after radiotherapy. Future incorporation of 65% volume increase as a pretest selection criterion may compensate for the low sensitivities of MRS and MRP.     

Methyl modified siloxane melting gels for hydrophobic films

Hybrid melting gels were prepared by a sol–gel process, starting with a mono-substituted siloxane and a di-substituted siloxane. Methyl-modified melting gels were prepared using (a) methyltriethoxysilane (MTES) with dimethyldiethoxysilane (DMDES) and (b) methyltrimethoxysilane (MTMS) together with dimethyldimethoxysilane (DMDMS). The gels with MTES–DMDES were prepared with concentrations between 50–50 and 75–25 mol%. The gels with MTMS–DMDMS were prepared with concentrations between 50–50 and 70–30 mol%. For both systems, the consolidation temperature, after which the melting gel no longer softens, increased with an increase in the amount of the mono-substituted siloxane, increasing from 135 to 160 °C for MTES–DMDES and increasing from 145 to 170 °C for MTMS–DMDMS. Coatings formed on mica substrates were about 1 mm thick, and showed no visible cracks. The surfaces of the coatings were profiled using micro-Raman spectroscopy, which revealed that methyl groups were concentrated at the surfaces of the films. All contact angles measured with water were greater than 90°.     

Photoelastic stress separation along lines of symmetry

By utilizing the compatibility and equilibrium field equations a differential relationship for the variation of the separated stress components along a line of symmetry is derived. This is in terms of only normal-incidence isochromatic data and does not use any isoclinic data. Its application to two problems using experimental data is demonstrated.     

Normal form for generalized Hopf bifurcation with non-semisimple 1 ∶ 1 resonance

The primary result of this research is the derivation of an explicit formula for the Poincaré-Birkhoff normal form of the generalized Hopf bifurcation with non-semisimple 1:1 resonance. The classical nonuniqueness of the normal form is resolved by the choice of complementary space which yields a unique equivariant normal form. The 4 leading complex constants in the normal form are calculated in terms of the original coefficients of both the quadratic and cubic nonlinearities by two different algorithms. In addition, the universal unfolding of the degenerate linear operator is explicitly determined. The dominant normal forms are then obtained by rescaling the variables. Finally, the methods of averaging and normal forms are compared. It is shown that the dominant terms of the equivariant normal form are, indeed, the same as those of the averaged equations with a particular choice for the constant of integration.Partially supported by NSF through grant MSS 90-57437, AFOSR through grant 91-0041 and NSERC of Canada.