Cebulantin,a Cryptic Lanthipeptide Antibiotic Uncovered Using Bioactivity‐Coupled HiTES

The majority of natural product biosynthetic gene clusters in bacteria are silent under standard laboratory growth conditions, making it challenging to uncover any antibiotics that they may encode. Herein, bioactivity assays are combined with high‐throughput elicitor screening (HiTES) to access cryptic, bioactive metabolites. Application of this strategy in Saccharopolyspora cebuensis, with inhibition of Escherichia coli growth as a read‐out, led to the identification of a novel lanthipeptide, cebulantin. Extensive NMR spectroscopic analysis allowed the elucidation of the structure of cebulantin. Subsequent bioactivity assays revealed it to be an antibiotic selective for Gram‐negative bacteria, especially against Vibrio species. This approach, referred to as bioactivity‐HiTES, has the potential to uncover cryptic metabolites with desired biological activities that are hidden in microbial genomes.     

Round-robin test of medium-energy ion scattering for quantitative depth profiling of ultrathin HfO2/SiO2/Si films

Medium-energy ion scattering (MEIS) has been used for quantitative depth profiling with single atomic layer resolution to determine the composition, thickness, and interface structure of ultrathin films and nanoparticles. To assure the consistency of the MEIS analysis, an international round-robin test (RRT) with nominally 1-, 3-, 5-, and 7-nm thick HfO₂ films was conducted among 12 institutions. The measurements were performed at each participating laboratory under their own conditions, and the collected data were analyzed. For the data analysis, the Moliere potential, the stopping and range of ions in matter (SRIM) 95 and new fitted electronic stopping power and the Chu straggling were used. For analyzing the MEIS data from the magnetic sector and electrostatic analyzers, the neutralization corrections of Marion and Young for 100-keV H⁺ and He⁺ ions and of Armstrong for 400- to 500-keV He⁺ ions were used. The standard deviations were 5.3% for the composition, 15.3% for the thickness, and 13.3% for the Hf content, and they were improved to 7.3%, 4.5%, and 7.0% by using refitted electronic stopping powers based on the experimental data. Hence, this study suggests that correct electronic stopping powers are critical for quantitative MEIS analysis.     

Two Gel States of a PEO‐PPO‐PEO Triblock Copolymer Formed by Different Mechanisms

Two gel states of a PEO‐PPO‐PEO (Pluronic P103) triblock copolymer in water are investigated using small‐angle X‐ray scattering, rheology and differential scanning calorimetry. The first gel state turns out to be the hexagonal microphase while the second gel state, showing turbidity change with four distinct regions, is somewhat disrupted. The second gel is moreover not thermoreversible as evidenced by rheology. Based upon the present study, two different gelation mechanisms for aqueous PEO‐PPO‐PEO solutions are proposed.     

Hyperlayer hollow-fiber flow field-flow fractionation of cells

Interest in low-cost, analytical-scale, highly efficient and sensitive separation methods for cells, among which bacteria, is increasing. Particle separation in hollow-fiber flow field-flow fractionation (HF FlFFF) has been recently improved by the optimization of the HF FIFFF channel design. The intrinsic simplicity and low cost of this HF FlFFF channel allows for its disposable usage. which is particularly appealing for analytical bio-applications. Here, for the first time, we present a feasibility study on high-performance, hyperlayer HF FIFFF of micrometer-sized bacteria (Escherichia coli) and of different types of cells (human red blood cells, wine-making yeast from Saccharomyces cerevisiae). Fractionation performance is shown to be at least comparable to that obtained with conventional, flat-channel hyperlayer FIFFF of cells, at superior size-based selectivity and reduced analysis time.     

Molecular dynamics study of gas hydrate formation

Long-time-scale molecular dynamics simulations are presented of the spontaneous formation of methane hydrate at a methane/liquid water interface. The water film was prepared at 300 K, 30 bar and showed no significant hydrate order. On crash cooling to 250 K, 300 bar (about 20 K subcooling), the system showed a rapid growth of hydrate clusters. Contrary to popular models for hydrate nucleation, the clusters formed first as two-dimensional arrangements and only later into three-dimensional cage structures; the results are, however, consistent with the local order model proposed recently. The hydrate clusters showed clear signatures of the type II hydrate structure even though the type I structure is the thermodynamically stable form for methane hydrate; this is in accord with the results of recent diffraction experiments.     

Removal of nickel from water and synthetic nuclear power plant coolant water by ion exchange resins

A method for the removal of nickel from waste water by adsorption process on ion exchange resin was studied. The percentage removal of nickel depends upon the contact time, pH and dose of adsorbent. Adsorption of nickel on ion exchange resins obeys Freundlich adsorption isotherm. The applicability of Lagergren kinetic model has also been investigated. In order to understand the adsorption behavior of nickel, a number of batch experiments were conducted at various pH values. The results show that the adsorption is maximum in the pH range 2 to 8. The studies showed that the ion exchange resins IRN77 and SKN1 can be used as an efficient adsorbent material for the removal of Ni(II) from water and coolant water.     

Evaluation of reaction spontaneity for acidic and reductive dissolutions of corrosion metal oxides using HyBRID chemical decontamination

Journal of Radioanalytical and Nuclear Chemistry - Complete sets of reaction mechanisms are proposed in the acidic and reductive dissolution of magnetite, nickel ferrite, and chromite using the...     

One‐dimensional polymeric chain structure of bis­(aniline)­di­thio­cyanato­cadmium(II)

In the title compound, catena‐poly­[[bis­(aniline‐N)cadmium(II)]‐di‐μ‐thio­cyanato‐S:N;N:S], [Cd­(SCN)₂­(C₆H₇N)₂], the Cd^II atom lies on an inversion centre and is in a distorted octahedral geometry. The coordination sphere contains two thio­cyanate (SCN) S atoms, two iso­thio­cyanate (NCS) N atoms and two aniline N atoms. The six‐coordinated Cd atoms run parallel to the b axis and are doubly bridged with neighbouring Cd atoms by SCN and NCS ligands. Thus, this complex has a one‐dimensional coordination polymeric chain structure in which the aniline ligand is in the trans conformation.     

Quantum capping potentials with point charges: a simple QM/MM approach for the calculation of large-molecule NMR shielding tensors

A simple quantum-mechanics/molecular-mechanics (QM/MM) approach for calculating NMR shielding tensors (sigma) is presented. The method involves capping the QM region with quantum capping potentials (QCPs) and representing the MM region with point charges. Test calculations on simple systems without MM charges show that calculated sigma values improve relative to the full QM results with increasing distance between the capped bond and chromophore. Calculations on the histidine amino acid and cytosine monophosphate (CMP) nucleic acid show that the use of QCPs with point charges result in mean errors in the isotropic component of sigma that are less than 1.6 ppm. The results also reveal that, contrary to previous work, the explicit effect of point charges on sigma through coupling with gauge factors, as in the gauge including atomic orbital approach, is minimal for the CMP molecule. The present QM/MM approach for calculating sigma is easy to apply and requires no code modification.     

Sequence- and site-specific photodissociation at 266 nm of protonated synthetic polypeptides containing a tryptophanyl residue

Photodissociation at 266 nm of protonated synthetic polypeptides containing a tryptophanyl residue was investigated using a homebuilt tandem time-of-flight mass spectrometer equipped with a matrix-assisted laser desorption/ionization source. Efficient photodissociation of the protonated peptides was demonstrated. Most of the intense peaks in the laser-induced tandem mass spectra were sequence ions. Furthermore, sequence ions due to cleavages at all the peptide bonds were observed; this is a feature of the technique that is particularly useful for peptide sequencing. Fragmentations at both ends of the tryptophanyl residue were especially prevalent, which can be useful for location of the tryptophanyl chromophore in a peptide.