Fine Tuning of Heme Reactivity: Hydrogen-Bonding and Dipole Interactions Affecting Ligand Binding to Hemoproteins

Heme reactivity in hemoproteins is governed by the microenvironment near the ligand binding site. In order to quantify polarity effects on heme ligand binding, the kinetics of O₂ and CO binding have been measured for a series of synthetic heme models equipped with a range of groups of varying dipole moments positioned near the heme coordination site. For hemes with polar aprotic groups, both O₂ on (k′) and off rates (k) are found to be dependent on the dipole moment. For model systems containing protic groups, the O₂ off rate is substantially reduced due to hydrogen bonding with the coordinated O₂. The hydrogen-bonding stabilization is estimated to be 0.7 and 1.6 kcal/mol for an alcohol and a secondary amide, respectively. CO binding displays little correlation with a polarity effect; instead it seems to depend upon the size and position of the polar group.     

Preparation and Characterization of PVC-based Photoresponsive Polymers Containing Azo-chromophores

New strategy was developed for the preparation of the photoresponsive polymers containing azo-chromophores as side-groups from the active chlorine atoms of polyvinyl chloride (PVC). The anilinated polyvinyl chloride precursors, anilinated polyvinyl chloride (PVC-An) and o-chloroanilinated polyvinyl chloride (PVC-oClAn), synthesized chemically by reacting PVC with sodium aniline (o-chloroaniline) salt. Then the two novel PVC-based polymers functionalized with azo-chromophores (PVC-AZ-An and PVC-o-AZ-NP) were synthesized via the azo-coupling reactions of the anilinated polyvinyl chloride precursors (PVC-An and PVC-oClAn) with the diazonium salts of aniline and alpha naphthylamine, respectively. The structures of polymers were confirmed by FTIR and ¹H–NMR. The UV-Vis spectra of the obtained polymer in THF solution showed that the π ?π ? absorption band of PVC-o-AZ-NP shifted to longer wavelength (red-shifted) due to the influence of auxochrome (-Cl) compared to the π ?π ? absorption band of PVC-AZ-An.     

The side chain effects on TPD-based copolymers: the linear chain leads to a higher jsc

Abstract

Alkyl substituents appended to polymers play the determining role on self-assembly and film-forming properties, and on device performance. In this work, we highlight the effects of the linear and branched flexible chains appended to the acceptor moiety (A) in D-A type copolymers. Two thieno[3,4-c]-pyrrole-4,6-dione (TPD) based copolymers PT1 and PT2 with different alkyl chains, were designed and synthesized. By comparison their UV-vis absorptions, HOMO/LUMO energy levels, as well as the characters in polymer solar cells, the influences of alkyl chains were investigated. Both copolymers showed molecular weights of 21?kDa and similar optical properties with a medium band gap of 1.93?eV, while PT2 with the branched chain exhibited a lower HOMO than that of PT1 (?5.43 vs???5.37?eV). In bulk heterojunction (BHJ) solar cells, PT1 with a linear chain presented a short circuit current (J_sc) of 6.76?mA cm^?2, open circuit voltage (V_oc) of 0.89?V and power conversion efficiency (PCE) of 2.92%. To the contrary, PT2 showed a J_sc of 3.53?mA cm^?2, V_oc of 0.99?V, delivering a relatively lower PCE of 2.05%. The result indicates that appending a linear alkyl chain to the TPD unit could sufficient enhance the J_sc value of the related polymer.     

Synthesis and Characterization of a Ruthenium(II) Complex for Photovoltaic Cells

We have designed and synthesized a new ruthenium complex, [(5‐amino‐1,10‐phenanthroline)bis(4,4′‐dicarboxylic acid‐2,2′‐bipyridine)]ruthenium(II) by introducing two types of ligands, 5‐amino‐1,10‐phenanthroline and 4,4′‐dicarboxylic acid‐2,2′‐bipyridine. We investigated the electronic, spectroscopic, electrochemical, and photovoltaic properties of the Ru(II) complex. The short‐circuit current density and overall solar‐to‐electric energy conversion efficiency of photovoltaic cells made with this Ru(II) complex were found to be 8.9 mA/cm² and 2.1%, respectively. A series of analogous Ru(II) complexes have also been synthesized and investigated to compare the effects of functional groups on various ligands. HOMO‐LUMO energies and molecular orbital surfaces have been investigated using semiempirical quantum chemical methods.     

Synthesis and Characterization of Water-Soluble Starch-Acrylamide Graft Copolymers

A series of water-soluble starch-polyacrylamide graft copolymers (ST-g-PAM) were prepared by Ce⁴⁺-initiated graft copolym-erizations of acrylamide (AM) onto starch (ST) dissolved in water at 30°C. The copolymers were found to contain 3-33% (wt) of ST. The structure of the copolymers, including the average number of grafts per chain and the efficiency of the initiator, was determined by acid-catalyzed degradation of the ST followed by size exclusion chromatography (SEC) analysis of the PAM chains and was found to be consistent with the presence or absence of free ST in the polymerization product prior to hydrolysis. The average number of grafts per starch molecule was found to be three or less, depending on conditions. The initiator efficiency (6–43%) was shown to decrease with increasing [Ce⁴⁺] and decreasing [AM], and this was found to be qualitatively in accord with the proposed mechanism of initiation and polymerization. The low efficiency was shown to be due, in part, to the low rate of reaction of Ce⁴⁺ compared to the polymerization rate. The copolymers were characterized by ultra-centrifugation, SEC, and viscometry.     

Polyurethane Ionomers from Cycloaliphatic Diisocyanate and Polytetramethylene Glycol

Abstract

Segmented polyurethane (PU) ionomers were prepared from cycloaliphatic diisocyanate [methylene bis(4-cyclohexyl isocyanate) (H₁₂MDI) and isophoron diisocyanate (IPDI)] and polytetramethylene glycol (PTMG) by using an anionic-type chain extender, viz., dimethylol propionic acid (DMPA). The effect of ionic content and butanediol (BD) on the state of dispersion and physical properties of emulsion-cast film was determined using Autosizer, transmission electron microscopy (TEM), Instron, and Rheovibron. With increased incorporations of DMPA in PU, particle size of emulsion decreased asymptotically, tensile modulus and strength increased, and the glass transition temperature (T _g) moved toward the higher temperature. On the other hand, with increased incorporation of BD in PU, particle size of emulsion, tensile modulus, and strength of the emulsion cast film increased, and the major transition of soft segment moved toward higher temperature. With regard to the structural effect of the isocyanate, H₁₂MDI gave finer dispersion and better mechanical properties over IPDI.     

Index Abstracts

Abstract

Calorimetric titrations have been performed in anhydrous acetonitrile at 25°C to give the complex stability constants (K _s) and the thermodynamic parameters (ΔGΔ, ΔHΔ and ΔSΔ) for the complexation of light lanthanoid(III) nitrates (La-Gd) with N-benzylaza-21-crown-7 3. Data analyses, assuming 1:1 stoichiometry, were successfully applied to all light lanthanoid-azacrown ether combinations employed. Using the present and previous data on 15- to 21- membered N-benzylazacrown ethers 1–3, the effect of ring size upon complexation behavior was discussed comparatively and globally from the thermodynamic point of view. The complexation behaviors are analyzed in terms of the size-fit concept, N-substituent coordination numbers, and lanthanoid's surface charge density. Thermodynamically the complexation of light lanthanoids with azacrown ethers is enthalpy-driven, while the cation selectivity is generally entropy-driven in acetonitrile.     

Study on the BODIPY-triazine-based tripod fluorescent systems: various structures from similar procedure

We report a small library of fluorophore-triazine tripod fluorescent system that can accommodate a combination of three different functional groups, such as fluorophore (BODIPY), ligand (or ligands) and auxiliary group. Syntheses, photophysical properties as well as binding properties towards metal ions of these BODIPY-triazine derivatives are described.     

Induction of decision trees using genetic programming for modelling ecotoxicity data: adaptive discretization of real-valued endpoints

Recent literature has demonstrated the applicability of genetic programming to induction of decision trees for modelling toxicity endpoints. Compared with other decision tree induction techniques that are based upon recursive partitioning employing greedy searches to choose the best splitting attribute and value at each node that will necessarily miss regions of the search space, the genetic programming based approach can overcome the problem. However, the method still requires the discretization of the often continuous-valued toxicity endpoints prior to the tree induction. A novel extension of this method, YAdapt, is introduced in this work which models the original continuous endpoint by adaptively finding suitable ranges to describe the endpoints during the tree induction process, removing the need for discretization prior to tree induction and allowing the ordinal nature of the endpoint to be taken into account in the models built.     

The application of an in situ karyotyping technique for mesenchymal stromal cells: a validation and comparison study with classical G-banding

The cytogenetic analysis of mesenchymal stromal cells (MSCs) is essential for verifying the safety and stability of MSCs. An in situ technique, which uses cells grown on coverslips for karyotyping and minimizes cell manipulation, is the standard protocol for the chromosome analysis of amniotic fluids. Therefore, we applied the in situ karyotyping technique in MSCs and compared the quality of metaphases and karyotyping results with classical G-banding and chromosomal abnormalities with fluorescence in situ hybridization (FISH). Human adipose- and umbilical cord-derived MSC cell lines (American Type Culture Collection PCS-500-011, PCS-500-010) were used for evaluation. The quality of metaphases was assessed by analyzing the chromosome numbers in each metaphase, the overlaps of chromosomes and the mean length of chromosome 1. FISH was performed in the interphase nuclei of MSCs for 6q, 7q and 17q abnormalities and for the enumeration of chromosomes via oligo-FISH in adipose-derived MSCs. The number of chromosomes in each metaphase was more variable in classical G-banding. The overlap of chromosomes and the mean length of chromosome 1 as observed via in situ karyotyping were comparable to those of classical G-banding (P=0.218 and 0.674, respectively). Classical G-banding and in situ karyotyping by two personnel showed normal karyotypes for both cell lines in five passages. No numerical or structural chromosomal abnormalities were found by the interphase-FISH. In situ karyotyping showed equivalent karyotype results, and the quality of the metaphases was not inferior to classical G-banding. Thus, in situ karyotyping with minimized cell manipulation and the use of less cells would be useful for karyotyping MSCs.