Modeling of NMR processing, toward efficient unattended processing of NMR experiments

Many alternative processing techniques have recently been proposed in the literature. Most of these techniques rely on specific acquisition protocols as well as on specific data processing techniques, the need for an efficient versatile and expandable NMR processing tool would be a particularly timely addition to the modern NMR spectroscopy laboratory. The work presented here consists in a modeling of the various possible NMR data processing approaches. This modeling presents a common working frame for most of the modern acquisition/processing protocols. Two different data modeling approaches are presented, strong modeling and weak modeling, depending whether the system under study or the measurement is modeled. The emphasis is placed on the weak modeling approach. This modeling is implemented in a computer program developed in python and called NPK standing (standing for NMR Processing Kernel), organized in four logical layers (i) mathematical kernel; (ii) elementary actions; (iii) processing phases; (iv) processing strategies. This organisation, along with default values for most processing parameters allows the use of the program in an unattended manner, producing close to optimal spectra. Examples are shown for 1D and 2D processing, and liquid and solid NMR spectroscopy. NPK is available from the site: http://abcis.cbs.cnrs.fr/NPK.     

Fast data preprocessing for chromatographic fingerprints of tomato cell wall polysaccharides using chemometric methods

The variability in the chemistry of cell wall polysaccharides in pericarp tissue of red-ripe tomato fruit (Solanum lycopersicon Mill.) was characterized by chemical methods and enzymatic degradations coupled to high performance anion exchange chromatography (HPAEC) and mass spectrometry analysis. Large fruited line, Levovil (LEV) carrying introgressed chromosome fragments from a cherry tomato line Cervil (CER) on chromosomes 4 (LC4), 9 (LC9), or on chromosomes 1, 2, 4 and 9 (LCX) and containing quantitative trait loci (QTLs) for texture traits, was studied. In order to differentiate cell wall polysaccharide modifications in the tomato fruit collection by multivariate analysis, chromatograms were corrected for baseline drift and shift of the component elution time using an approach derived from image analysis and mathematical morphology. The baseline was first corrected by using a "moving window" approach while the peak-matching method developed was based upon location of peaks as local maxima within a window of a definite size. The fast chromatographic data preprocessing proposed was a prerequisite for the different chemometric treatments, such as variance and principal component analysis applied herein to the analysis. Applied to the tomato collection, the combined enzymatic degradations and HPAEC analyses revealed that the firm LCX and CER genotypes showed a higher proportion of glucuronoxylans and pectic arabinan side chains while the mealy LC9 genotype demonstrated the highest content of pectic galactan side chains. QTLs on tomato chromosomes 1, 2, 4 and 9 contain important genes controlling glucuronoxylan and pectic neutral side chains biosynthesis and/or metabolism.     

Compared behavior of 5-deoxy-5-iodo-D-xylo- and L-arabinofuranosides in the reductive elimination reaction: a strong dependence on structural parameters and on the presence of Zn2+. A combined experimental and theoretical investigation

In the framework of a project devoted to the chemical transformation of monosaccharides from hemicelluloses into higher added value materials, the zinc-induced reductive elimination from 5-deoxy-5-iodo derivatives of D-xylose and L-arabinose was carried out. This study gave us the opportunity to observe surprising behaviors. In particular, the reaction strongly depends on structural parameters (protecting group pattern, configuration at C-4) and on the presence of Zn2+ ions. Collaterally with the experimental work, water solvent PCM HF-DFT (MPW1K/LANL2DZ) computations were performed to obtain insight into the mechanism for the reductive part of the reaction sequence. Without Zn2+, the zinc insertion reaction was found to proceed through a concerted but non-synchronous process involving a relatively large energy barrier (32 kcal mol-1) that directly leads to the presumed organozinc intermediate. In the presence of Zn2+, a three-step mechanism was identified in which the cation coordinates the anomeric and ring oxygen atoms and also the sugar iodine atom, causing an activating effect on the zinc insertion process by facilitating the homolytic rupture of the C-I bond. Complexes between zinc and Zn2+ bound carbohydrates were characterized with large stabilization energies, suggesting that Zn2+ might enhance the affinity of the organic compound with the zinc metal surface.     

Mechanistic insights into the palladiumII-catalyzed hydroxyalkoxylation of 2-allylphenols

The Pd(OCOCF3)2/[(HOCH2CH2NHCOCH2)2NCH2]2-catalyzed oxidation of o-allylphenol with H2O2 in water/methanol affords a syn and anti mixture of 2-(1,2-dihydroxypropyl)phenol and 2-(2-hydroxy-1-methoxypropyl)phenol. Mechanistic experiments and ESI-MS studies support a pathway wherein isomerization of the C=C bond followed by its epoxidation and oxirane opening led to the products. Recycling of the catalytic system led to gradual lost of activity.     

Studies on puupehenone-metabolites of a Dysidea sp.: structure and biological activity

Puupehenone (1) and a series of its congeners (2-6) have been isolated from a Dysidea sponge. The unprecedented 20-acetoxy-haterumadienone (2) exhibiting a five-membered contracted ring, has been characterized. In addition, stereochemical assignment of two previously reported acetone adducts of puupehenone (5 and 6) has been made. Finally, the inhibition of mitochondrial respiratory chain as well as antibacterial and antifungal activities of all compounds has been evaluated.     

The role of substituents on functionalized 1,10-phenanthroline in controlling the emission properties of cationic iridium(III) complexes of interest for electroluminescent devices

The photophysical and electrochemical properties of the novel complexes [Ir(ppy)(2)(5-X-1,10-phen)][PF(6)] (ppy = 2-phenylpyridine, phen = phenanthroline, X = NMe(2), NO(2)), [Ir(pq)(2)(5-X-1,10-phen)][PF(6)] (pq = 2-phenylquinoline, X = H, Me, NMe(2), NO(2)), [Ir(ppy)2(4-Me,7-Me-1,10-phen)][PF(6)], [Ir(ppy)2(5-Me,6-Me-1,10-phen)][PF(6)], [Ir(ppy)(2)(2-Me,9-Me-1,10-phen)][PF(6)], and [Ir(pq)2(4-Ph,7-Ph-1,10-phen)][PF(6)] have been investigated and compared with those of the known reference complexes [Ir(ppy)(2)(4-Me or 5-H or 5-Me-1,10-phen)][PF(6)] and [Ir(ppy)(2)(4-Ph,7-Ph-1,10-phen)][PF(6)], showing how the nature and number of the phenanthroline substituents tune the color of the emission, its quantum yield, and the emission lifetime. It turns out that the quantum yield is strongly dependent on the nonradiative decay. The geometry, ground state, electronic structure, and excited electronic states of the investigated complexes have been calculated on the basis of density functional theory (DFT) and time-dependent DFT approaches, thus substantiating the electrochemical measurements and providing insight into the electronic origin of the absorption spectra and of the lowest excited states involved in the light emission process. These results provide useful guidelines for further tailoring of the photophysical properties of ionic Ir(III) complexes.     

Influence of the thiazole backbone on the structural, redox, and optical properties of dithiolene and diselenolene complexes

Metalation of N-methyl-1,3-thiazoline-2-thione followed by reaction with elemental S or Se affords a simple and efficient approach to N-methyl-1,3-thiazoline-2-thione-4,5-dithiolate (Me-thiazdt) and the diselenolate (Me-thiazds) analogue. In the presence of metal II centers such as Zn, Ni, and Pd these ligands afford the corresponding dianionic dithiolene and diselenolene complexes. The Ni and Pd dianionic complexes are easily oxidized into the monoanionic species. Complexes were isolated and characterized by single-crystal X-ray crystallography. Most often a substitutional S/N-Me disorder is observed, attributable to the square-planar trans complexes disordered on two positions or coexistence of both cis and trans isomers on inversion centers. Monoanionic complexes exhibit a strong NIR absorption band with epsilon values up to 33 750 M(-1) cm(-1).     

The sponge phase of a mixed surfactant system

We study the sponge phase of the mixed non-ionic/ionic surfactant system C14DMAO-TTAB-hexanol-brine. Our aim is to determine if this phase exists in this mixed system and if it preserves or changes its structure when the relative amount of the charged surfactant is increased in the mixture. SAXS, FFEM, and conductivity results show that for the same bilayer volume fraction the sponge phase preserves its global structure. We propose a method to determine the geometrical obstruction factor from electrical conductivity measurements in ionic sponge phases. Analysis of lamellar phases in the same system shows that the bilayer thickness increases when the ionic surfactant concentration is increased.     

Efficient asymmetric hydrogenation of olefins with hydrazine-derived diphosphoramidites

Enantiopure, BINOL-derived diphosphoramidites built upon an achiral hydrazine spacer are efficient ligands for the hydrogenation of 2-(acetylamino)-3-(aryl)-propenoic methyl esters. The activity and enantioselectivity of the hydrazine derivatives were shown to be markedly influenced by the nature of the two NR substituents, symmetrical but bulky R groups leading to the best results. A diphosphosphoramidite obtained from (t)BuHNNH(t)Bu resulted in ee's as high as 95%. The present results contradict previous reports on "short" diphosphoramidites.     

Two-photon absorption of Zn(II) octupolar molecules

In this work we present an investigation of the non-linear optical (NLO) properties of two octupolar chromophores: [Zn(4,4'-bis(dibutylaminostyryl)-[2,2']-bipyridine)(3)](2+) and [Zn(4,4'-bis((E)-2-(N-(TEG)pyrrol-2-yl)vinyl)-[2,2']-bipyridine)(3)](2+) with Zn(ii) as the coordination center, using two-photon emission technique (TPE) in fs-pulse temporal regime. Compared to the free ligands, our results do not show a net increase in the two-photon absorption (TPA) cross-section for the octupolar complexes, once normalized to the ligand unit. This is in partial disagreement with a previous theoretical study investigating the first molecule where a significant increase of the TPA cross-section was predicted (X. J. Liu, et al., J. Chem. Phys., 2004, 120, 11 493).