Morphology and molecular organisation of liquid-crystalline perylene-3,4,9,10-tetra-(n-hexylester) deposited on a solid substrate

Liquid-crystalline perylene-3,4,9,10-tetra-(n-hexylester) forms characteristic dendritic or flower-like structures at room temperature when it is deposited on a hydrophilic glass substrate using the zone-casting technique. It was found that such unique structures were not possible to be created simply by recrystallisation of this dye from a liquid-crystalline columnar phase. On the basis of the observations using a confocal microscope and the study of wide angle X-ray scattering (WAXS) as well as the analysis of the absorption and fluorescence spectra, some conclusions, concerning the molecular organisation in the dendritic structure, are drawn. Based on the research, one can assume that the dendrites are formed by columnar molecular aggregates with the column axes parallel to the substrate. Such an organisation of the molecules can be interesting from the point of view of organic electronics.     

Size does matter! Label-free detection of small molecule–protein interaction

This review is focused on methods for detecting small molecules and, in particular, the characterisation of their interaction with natural proteins (e.g. receptors, ion channels). Because there are intrinsic advantages to using label-free methods over labelled methods (e.g. fluorescence, radioactivity), this review only covers label-free techniques. We briefly discuss available techniques and their advantages and disadvantages, especially as related to investigating the interaction between small molecules and proteins. The reviewed techniques include well-known and widely used standard analytical methods (e.g. HPLC-MS, NMR, calorimetry, and X-ray diffraction), newer and more specialised analytical methods (e.g. biosensors), biological systems (e.g. cell lines and animal models), and in-silico approaches.     

Multigrid preconditioning for time-periodic Navier–Stokes problems

We propose to solve time-periodic Navier–Stokes problems by a discrete Fourier transform in time. Truncating the Fourier series yields a nonlinear system of equations for the unknown Fourier coefficients. Its solution by Picard iteration requires to solve a sequence of linear systems of equations. The focus of this work is on an efficient method to solve these linear systems. We employ GMRES, complemented by an optimal block triangular preconditioner. (© 2015 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim)     

Sensing with ion current rectifying solid-state nanopores

This review gives a current opinion on the state of the art of ion rectifying solid-state nanopore sensors, as well as on the recent directions and challenges of the field, focusing in particular on the progress made in the last two to three years. The review explains the phenomenon of ion current rectification in geometrically asymmetric nanopores and the principle of sensing with these systems. Aside from the conventional approach of analyte immobilization onto the pore surface, some intriguing sensing schemes that decouple the pore selectivity from the surface and promise a more flexible sensing approach are also presented. Lastly, an overview of the recent effort towards amplifying the ion currents and the rectification of these sensors is given, followed by a brief discussion of future perspectives for the field.     

In Silico Analysis of P450s and Their Role in Secondary Metabolism in the Bacterial Class Gammaproteobacteria

The impact of lifestyle on shaping the genome content of an organism is a well-known phenomenon and cytochrome P450 enzymes (CYPs/P450s), heme-thiolate proteins that are ubiquitously present in organisms, are no exception. Recent studies focusing on a few bacterial species such as Streptomyces, Mycobacterium, Cyanobacteria and Firmicutes revealed that the impact of lifestyle affected the P450 repertoire in these species. However, this phenomenon needs to be understood in other bacterial species. We therefore performed genome data mining, annotation, phylogenetic analysis of P450s and their role in secondary metabolism in the bacterial class Gammaproteobacteria. Genome-wide data mining for P450s in 1261 Gammaproteobacterial species belonging to 161 genera revealed that only 169 species belonging to 41 genera have P450s. A total of 277 P450s found in 169 species grouped into 84 P450 families and 105 P450 subfamilies, where 38 new P450 families were found. Only 18% of P450s were found to be involved in secondary metabolism in Gammaproteobacterial species, as observed in Firmicutes as well. The pathogenic or commensal lifestyle of Gammaproteobacterial species influences them to such an extent that they have the lowest number of P450s compared to other bacterial species, indicating the impact of lifestyle on shaping the P450 repertoire. This study is the first report on comprehensive analysis of P450s in Gammaproteobacteria.     

Germaborenes: Borylene Transfer Agents for the Synthesis of Iminoboranes

Halide and phenyl substituted germaborenes were shown to react with azides at room temperature and transfer a borylene moiety to give iminoboranes. This iminoborane synthesis based on a borylene transfer route was investigated computationally in the case of the phenyl substituted germaborene.     

Phosphine-Stabilized Pnictinidenes

The reaction of the intramolecular germylene-phosphine Lewis pair (o-PPh₂)C₆H₄GeAr* ( 1 ) with Group 15 element trichlorides ECl₃ (E=P, As, Sb) was investigated. After oxidative addition, the resulting compounds (o-PPh₂)C₆H₄(Ar*)Ge(Cl)ECl₂ ( 2 : E=P, 3 : E=As, 4 : E=Sb) were reduced by using sodium metal or LiHBEt₃. The molecular structures of the phosphine-stabilized phosphinidene (o-PPh₂)C₆H₄(Ar*)Ge(Cl)P ( 5 ), arsinidene (o-PPh₂)C₆H₄(Ar*)Ge(Cl)As ( 6 ) and stibinidene (o-PPh₂)C₆H₄(Ar*)Ge(Cl)Sb ( 7 ) are presented; they feature a two-coordinate low-valent Group 15 element. After chloride abstraction, a cyclic germaphosphene [(o-PPh₂)C₆H₄(Ar*)GeP] [B(C₆H₃(CF₃)₂)₄] ( 8 ) was isolated. The ³¹P NMR data of the germaphosphene were compared with literature examples and analyzed by quantum chemical calculations. The phosphinidene was treated with [iBu₂AlH]₂, and the product of an Al−H addition to the low-valent phosphorus atom (o-PPh₂)C₆H₄(Ar*)Ge(H)P(H)Al(C₄H₉)₂ ( 9 ) was characterized.