Understanding the electronic reorganization along the nonpolar [3 + 2] cycloaddition reactions of carbonyl ylides

The nonpolar [3 + 2] cycloaddition (32CA) reaction of the carbonyl ylide (CY) 23 with tetramethylethylene (TME) 24 has been studied with DFT methods at the B3LYP/6-31G* level. This cycloaddition reaction, which has a very low activation energy of 4.7 kcal/mol, takes place through a synchronous transition structure. A topological analysis of the ELF along the 32CA reaction provides a new scope of the electronic structure of CY 23 as a pseudodiradical species offering a sound explanation of the high reactivity of this CY in nonpolar reactions. In addition, this analysis points to the nonparticipation of the oxygen lone pairs in the 32CA reaction. This cycloaddition can be seen as a pseudodiradical attack of the terminal carbon atoms of the CY 23 on the π system of TME 24. Therefore, the present study establishes that this 32CA reaction, which is not a pericyclic electron reorganization, may be electronically classified as a [2n + 2π] process.     

Protecting-group-free synthesis of chokols

As a result of a combined theoretical and experimental study, we describe a two-step protocol for the preparation of an optically pure, multifunctional, cyclopentanic core shared by a number of natural products. This process is based on a hitherto unreported Ti(III)-mediated diastereoselective cyclization in which the hydroxy-directed template effect played by the Ti(III) species was found to be crucial for the stereoselective outcome of the reaction. The viability of this concept was confirmed with the first protecting-group free synthesis of three enantiopure chokols, namely, chokols K, E, and B.     

Understanding the kinetic solvent effects on the 1,3‐dipolar cycloaddition of benzonitrile N‐oxide: a DFT study

The kinetic solvent effects on the 1,3‐dipolar cycloaddition (13DC) of benzonitrile N‐oxide with cyclopentene [T. Rispens and J. B. F. N. Engberts, J. Phys. Org. Chem. 2005; 18 , 908–917] have been studied using density functional theory (DFT) at the B3LYP/6‐31G(d) level. Solvent effects were analyzed by means of the polarizable continuum model (PCM). The analysis of the potential energy surface shows that this reaction follows an asynchronous concerted mechanism. The topological analysis of the electron localization function (ELF) of the turning points along the reaction pathway explains the diradical nature of mechanism of this reaction. Inclusion of solvent effects does not substantially modify this behavior. The present study points out that, contrary to Diels–Alder reactions, the increase in the solvent polarity leads to a slow inhibition of the 13DC reaction, because of the low polarity of the transition state. Explicit solvation involving the coordination of one water molecule to the dipole puts in evidence the importance of hydrogen bonding in the modest acceleration of this 13DC reaction. These results are in good agreement with experimental outcomes. Copyright © 2011 John Wiley & Sons, Ltd.     

Temperature effect on the synthesis of Au-Pt bimetallic nanoparticles

Pt-Au bimetallic nanoparticles have been synthesized by the polyol method and stabilized with poly(vinylpyrrolidone) (PVP), modifying the temperature of synthesis. Interesting structure changes were observed in the nanoparticles as the temperature was varied. At lower temperatures no bimetallic nanoparticles were detected, but as the temperature increased bimetallic nanoparticles started to appear, commonly obtaining core-shell nanoparticles, always covered by the polymer. This originates the modification of the optical response of the system in the UV-visible region. An absorption peak centered at 520 nm at low temperatures was observed (100-110 degrees C); at higher temperatures (130-170 degrees C) there were non detectable absorption peaks, and finally at the two highest temperatures (180-190 degrees C) the reappearance of an absorption feature centered at 510 nm was noticed. These UV-visible results indirectly imply the composition of the surface of the particle. The structure of the particles has been determined using transmission electron microscopy and high-angle annular dark field (HAADF), the latter being a powerful technique to determine the structural composition of the particles and allowing a direct correlation of the optical response with their structural composition. X-ray absorption near-edge structure (XANES) and extended X-ray absorption fine structure (EXAFS) studies were also performed on the samples and their results support the idea of a Pt(core)-Au(shell) structure with the elements segregated from each other. The combination of these experimental techniques with calculated UV-vis absorption spectra allowed, in a reliable way, the elucidation of the nanoparticles structure and elemental distribution.     

Fluorescent Protein–photoprotein Fusions and Their Applications in Calcium Imaging

Calcium‐activated photoproteins, such as aequorin, have been used as luminescent Ca²⁺ indicators since 1967. After the cloning of aequorin in 1985, microinjection was substituted by its heterologous expression, which opened the way for a widespread use. Molecular fusion of green fluorescent protein (GFP) to aequorin recapitulated the nonradiative energy transfer process that occurs in the jellyfish Aequorea victoria, from which these two proteins were obtained, resulting in an increase of light emission and a shift to longer wavelength. The abundance and location of the chimera are seen by fluorescence, whereas its luminescence reports Ca²⁺ levels. GFP‐aequorin is broadly used in an increasing number of studies, from organelles and cells to intact organisms. By fusing other fluorescent proteins to aequorin, the available luminescence color palette has been expanded for multiplexing assays and for in vivo measurements. In this report, we will attempt to review the various photoproteins available, their reported fusions with fluorescent proteins and their biological applications to image Ca²⁺ dynamics in organelles, cells, tissue explants and in live organisms.     

One-dimensional metal–organic frameworks built by coordinating 2,4,6-tris(4-pyridyl)-1,3,5-triazine linker with copper nodes: CO2 adsorption properties

The reaction between 2,4,6-tris(4-pyridyl)-1,3,5-triazine (4-tpt) and copper(II) hexafluoroacetylacetone (Cu(hfa)₂) yields two different 1D metal–organic frameworks (MOFs), [(Cu(hfa)₂)₂(4-tpt)]_n ( 1 ) and [Cu(hfa)₂(4-tpt)]_n ( 2 ). The Cu:4-tpt ratio in the new MOFs is determined by the reaction medium, particularly, the solvent used. The two compounds have been fully characterized, including crystal structure elucidation. [(Cu(hfa)₂)₂(4-tpt)]_n ( 1 ), with a 2:1 Cu:4-tpt ratio, could be precipitated in either 1,1,2-trichloroethane or supercritical CO₂. In ( 1 ), 4-tpt shows a tritopic coordination mode, but only half of the Cu(hfa)₂ subunits act as a node, thus connecting two 4-tpt and giving a 1D network. The other half of Cu(hfa)₂ subunits are connected only to one pyridine and thus protrude along the chains. The later Cu(hfa)₂ fragments show a labile character and can be dissolved in diethyl ether to give the second MOF [Cu(hfa)₂(4-tpt)]_n ( 2 ), with a 1:1 Cu:4-tpt ratio. The compound ( 2 ) has also a 1D structure, with all the incorporated copper atoms acting as nodes. In this case, the packing of the chains defines accessible channels, which are perpendicular to the chain axis. After activation, N₂ adsorption/desorption measurements at 77 K confirm the microporous character of ( 2 ) with an apparent surface area of 190 m² g⁻¹. Besides, at 273 K this material clearly shows a significant adsorption of CO₂ prompted by noncoordinated nitrogen in the triazine linker.     

Spline quasi-interpolation in the Bernstein basis and its application to digital elevation models

A nonstandard low-cost spline approximation method for approximating bivariate functions is constructed. It is applied for Digital Elevation approximation and then its accuracy in the downscaling process is studied.