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11.
Andrew P. Mendham John Spencer Babur Z. Chowdhry Trevor J. Dines Muhammad Mujahid Rex A. Palmer Graham J. Tizzard Simon J. Coles 《Journal of chemical crystallography》2011,41(9):1323-1327
Abstract
The cyclic di-amino acid peptide N,N′-diacetyl-cyclo(Gly-Gly), C8H10N2O4, crystallizes in the triclinic space group P[`1] Pbar{1} with unit cell parameters a = 9.4855(4) ?, b = 10.0250(3) ?, c = 10.0763(4) ?, α = 73.682(2)°, β = 82.816(2)°, γ = 81.733(2)°, V = 906.40(6) ?3, Z = 4 (2 molecules, A and B, per asymmetric unit), Dc = 1.452 g cm−3 and linear absorption coefficient 0.118 mm−1. The crystal structure determination was carried out with MoKα X-ray data measured at 120(2) K. In the final refinement cycle the data/restraints/parameter ratios were 4124/0/258 and goodness-of-fit on F2 = 1.0008. Final R indices for [I > 2σ(I)] were R1 = 0.0501, wR2 = 0.1007 and R indices (all data) R1 = 0.0864, wR2 = 0.11180. The largest electron density difference peak and hole were 0.241 and −0.232 e ?−3, respectively. The DKP rings in both molecules A and B have boat conformations with pseudo mm2 (C2v) symmetry if the N atoms and CH2 groups are considered identical. In each case, the prow and stern of the boat are the α-carbons C(3) and C(6). The overall molecular symmetry of molecules A and B is approximately C2 with the twofold symmetry axis of the DKP boat being maintained through the centre of the DKP ring. Details of the molecular geometry are compared with that of the parent compound cyclo(Gly-Gly) in which the DKP ring is planar with exact symmetry [`1] bar{1} (Ci). 相似文献12.
Andrew P. Mendham Trevor J. Dines M. J. Snowden Robert Withnall Babur Z. Chowdhry 《Journal of Raman spectroscopy : JRS》2009,40(11):1508-1520
B3‐LYP/cc‐pVDZ calculations of the gas‐phase structure and vibrational spectra of the isolated molecule cyclo(L ‐Ser‐L ‐Ser), a cyclic di‐amino acid peptide (CDAP), were carried out by assuming C2 symmetry. It is predicted that the minimum‐energy structure is a boat conformation for the diketopiperazine (DKP) ring with both L ‐seryl side chains being folded slightly above the ring. An additional structure of higher energy (15.16 kJ mol−1) has been calculated for a DKP ring with a planar geometry, although in this case two fundamental vibrations have been calculated with imaginary wavenumbers. The reported X‐ray crystallographic structure of cyclo(L ‐Ser‐L ‐Ser), shows that the DKP ring displays a near‐planar conformation, with both the two L ‐seryl side chains being folded above the ring. It is hypothesized that the crystal packing forces constrain the DKP ring in a planar conformation and it is probable that the lower energy boat conformation may prevail in the aqueous environment. Raman scattering and Fourier‐transform infrared (FT‐IR) spectra of solid state and aqueous solution samples of cyclo(L ‐Ser‐L ‐Ser) are reported and discussed. Vibrational band assignments have been made on the basis of comparisons with the calculated vibrational spectra and band wavenumber shifts upon deuteration of labile protons. The experimental Raman and IR results for solid‐state samples show characteristic amide I vibrations which are split (Raman: 1661 and 1687 cm−1, IR: 1666 and 1680 cm−1), possibly due to interactions between molecules in a crystallographic unit cell. The cis amide I band is differentiated by its deuterium shift of ∼30 cm−1, which is larger than that previously reported for trans amide I deuterium shifts. A cis amide II mode has been assigned to a Raman band located at 1520 cm−1. The occurrence of this cis amide II mode at a wavenumber above 1500 cm−1 concurs with results of previously examined CDAP molecules with low molecular weight substituents on the Cα atoms, and is also indicative of a relatively unstrained DKP ring. Copyright © 2009 John Wiley & Sons, Ltd. 相似文献
13.
The ellipticity of operators on a manifold with edge is defined as the bijectivity of the components of a principal symbolic
hierarchy , where the second component takes values in operators on the infinite model cone of the local wedges. In the general understanding
of edge problems there are two basic aspects: Quantisation of edge-degenerate operators in weighted Sobolev spaces, and verifying
the ellipticity of the principal edge symbol which includes the (in general not explicitly known) number of additional conditions of trace and potential type on the edge.
We focus here on these questions and give explicit answers for a wide class of elliptic operators that are connected with
the ellipticity of edge boundary value problems and reductions to the boundary. In particular, we study the edge quantisation
and ellipticity for Dirichlet–Neumann operators with respect to interfaces of some codimension on a boundary. We show analogues
of the Agranovich–Dynin formula for edge boundary value problems.
Nicoleta Dines and Bert-Wolfgang Schulze were supported by Chinese-German Cooperation Program “Partial Differential Equations”,
NNSF of China and DFG of Germany. Xiaochun Liu was supported by NNSF of China through Grant No. 10501034, and Chinese-German
Cooperation Program “Partial Differential Equations”, NNSF of China and DFG of Germany. 相似文献
14.
A.O. Macchiavelli M.A. Deleplanque R.M. Diamond F.S. Stephens E.L. Dines J.E. Draper 《Nuclear Physics A》1985,432(2):436-450
We have studied neutron transfer reactions induced by 132Xe on three rare-earth targets at . By using particle-particle-γ coincidence techniques we were able to identify final products and states populated in the one- and two-neutron reactions.The dependence of the transfer probabilities on the distance of closest approach is discussed in terms of effective penetration factors. The results seem to indicate the importance in two-neutron transfer of intermediate states with ? 6 MeV of excitation energy. The effect of excitation energy on the enhancement of the two-neutron transfer is discussed. A qualitative interpretation of the spin dependence of the one-neutron γ-ray yields in terms of the spatial localization of the wave functions involved is given. 相似文献
15.
Finze M Bernhardt E Terheiden A Berkei M Willner H Christen D Oberhammer H Aubke F 《Journal of the American Chemical Society》2002,124(51):15385-15398
Tris(trifluoromethyl)borane carbonyl, (CF(3))(3)BCO, is obtained in high yield by the solvolysis of K[B(CF(3))(4)] in concentrated sulfuric acid. The in situ hydrolysis of a single bonded CF(3) group is found to be a simple, unprecedented route to a new borane carbonyl. The related, thermally unstable borane carbonyl, (C(6)F(5))(3)BCO, is synthesized for comparison purposes by the isolation of (C(6)F(5))(3)B in a matrix of solid CO at 16 K and subsequent evaporation of excess CO at 40 K. The colorless liquid and vapor of (CF(3))(3)BCO decomposes slowly at room temperature. In the gas phase t(1/2) is found to be 45 min. In the presence of a large excess of (13)CO, the carbonyl substituent at boron undergoes exchange, which follows a first-order rate law. Its temperature dependence yields an activation energy (E(A)) of 112 kJ mol(-)(1). Low-pressure flash thermolysis of (CF(3))(3)BCO with subsequent isolation of the products in low-temperature matrixes, indicates a lower thermal stability of the (CF(3))(3)B fragment, than is found for (CF(3))(3)BCO. Toward nucleophiles (CF(3))(3)BCO reacts in two different ways: Depending on the nucleophilicity of the reagent and the stability of the adducts formed, nucleophilic substitution of CO or nucleophilic addition to the C atom of the carbonyl group are observed. A number of examples for both reaction types are presented in an overview. The molecular structure of (CF(3))(3)BCO in the gas phase is obtained by a combined microwave-electron diffraction analysis and in the solid state by single-crystal X-ray diffraction. The molecule possesses C(3) symmetry, since the three CF(3) groups are rotated off the two possible positions required for C(3)(v)() symmetry. All bond parameters, determined in the gas phase or in the solid state, are within their standard deviations in fair agreement, except for internuclear distances most noticeably the B-CO bond lengths, which is 1.69(2) A in the solid state and 1.617(12) A in the gas phase. A corresponding shift of nu(CO) from 2267 cm(-)(1) in the solid state to 2251 cm(-)(1) in the gas phase is noted in the vibrational spectra. The structural and vibrational study is supported by DFT calculations, which provide, in addition to the equilibrium structure, confirmation of experimental vibrational wavenumbers, IR-band intensities, atomic charge distribution, the dipole moment, the B-CO bond energy, and energies for the elimination of CF(2) from (CF(3))(x)()BF(3)(-)(x)(), x = 1-3. In the vibrational analysis 21 of the expected 26 fundamentals are observed experimentally. The (11)B-, (13)C-, and (19)F-NMR data, as well as the structural parameters of (CF(3))(3)BCO, are compared with those of related compounds. 相似文献
16.
17.
18.
Resonance Raman Spectroscopy,and Its Application to Inorganic Chemistry. New Analytical Methods (27)
Robin J. H. Clark Trevor J. Dines 《Angewandte Chemie (International ed. in English)》1986,25(2):131-158
Resonance Raman spectra are obtained when the wave number of the exciting radiation is close to, or coincident with, that of an electronic transition of the scattering species. Such spectra are usually characterized by a very large enhancement of the intensities of particular Raman bands, sometimes with the appearance of intense overtone and combination tone progressions. The technique provides detailed information about excited electronic states because it is only the vibrational modes associated with the chromophore that are resonance-Raman active. Additionally, the high sensitivity is such that compounds at concentrations as low as 10?6 mol/L may be detected, enabling resonance Raman spectroscopy to be used as an analytical tool and for the study of chromophores in molecules of biological interest. 相似文献
19.
For the first time, a full scaled quantum chemical normal coordinate analysis has been performed on [Ru(LL')(3)](2+) complexes, where LL' = 2,2'-bipyrazine (bpz) or 2,2'-bipyrimidine (bpm). Geometric structures were fully optimized using density functional theory and an effective core potential basis set. The infrared and Raman spectra were calculated using the optimized geometries. The results of the calculations provide a highly satisfactory fit to the experimental infrared and Raman spectra, and the potential energy distributions allow a detailed understanding of the vibrational bands therein. 相似文献
20.
The protonation of 4-(2-pyridylazo)-N,N-dimethylaniline (PYAD) in aqueous solution and its adsorption on oxide surfaces has been studied by resonance Raman (RR) spectroscopy. The gas phase structures of neutral, protonated and diprotonated forms of PYAD were modelled by SCF-DFT calculations at the B3-LYP/DZ level, enabling determination of the simulated vibrational spectra of these species, together with vibrational assignments, and providing confirmation that protonation occurs initially at the pyridyl nitrogen atom. Electronic absorption spectra were interpreted using time-dependent DFT calculations. Adsorption of PYAD on SiO2 or Al2O3 surfaces is mainly via the neutral species, hydrogen bonded to surface OH groups, although a small proportion of adsorbed molecules are protonated. By contrast, adsorption on SiO2–Al2O3 results in complete protonation, indicating the presence of Brønsted acidic sites with pKa values ? 4.5, whereas adsorption on H-mordenite results in diprotonation, indicating the presence of Brønsted acidic sites with pKa values ? 2. 相似文献