Investigating Membrane-Mediated Antimicrobial Peptide Interactions with Synchrotron Radiation Far-Infrared Spectroscopy

Synchrotron radiation-based Fourier transform infrared spectroscopy enables access to vibrational information from mid over far infrared to even terahertz domains. This information may prove critical for the elucidation of fundamental bio-molecular phenomena including folding-mediated innate host defence mechanisms. Antimicrobial peptides (AMPs) represent one of such phenomena. These are major effector molecules of the innate immune system, which favour attack on microbial membranes. AMPs recognise and bind to the membranes whereupon they assemble into pores or channels destabilising the membranes leading to cell death. However, specific molecular interactions responsible for antimicrobial activities have yet to be fully understood. Herein we probe such interactions by assessing molecular specific variations in the near-THz 400–40 cm⁻¹ range for defined helical AMP templates in reconstituted phospholipid membranes. In particular, we show that a temperature-dependent spectroscopic analysis, supported by 2D correlative tools, provides direct evidence for the membrane-induced and folding-mediated activity of AMPs. The far-FTIR study offers a direct and information-rich probe of membrane-related antimicrobial interactions.     

An analysis of cross-correlations in an emerging market

We apply random matrix theory to compare correlation matrix estimators C$C$ obtained from emerging market data. The correlation matrices are constructed from 10 years of daily data for stocks listed on the Johannesburg stock exchange (JSE) from January 1993 to December 2002. We test the spectral properties of C$C$ against random matrix predictions and find some agreement between the distributions of eigenvalues, nearest neighbour spacings, distributions of eigenvector components and the inverse participation ratios for eigenvectors. We show that interpolating both missing data and illiquid trading days with a zero-order hold increases agreement with RMT predictions. For the more realistic estimation of correlations in an emerging market, we suggest a pairwise measured-data correlation matrix. For the data set used, this approach suggests greater temporal stability for the leading eigenvectors. An interpretation of eigenvectors in terms of trading strategies is given, as opposed to classification by economic sectors.     

Characterization of long-chain carboxylic esters with CH3OBOCH 3 + in a small fourier-transform ion cyclotron resonance mass spectrometer

The usefulness of CH₃OBOCH ₃ ⁺ as a chemical ionization reagent was examined by allowing the ion to react with carboxylic esters of various chain lengths in a small Fourier-transform ion cyclotron resonance mass spectrometer equipped with a permanent magnet. CH₃OBOCH ₃ ⁺ is a strong electrophile and readily abstracts an oxygen-containing group from the carboxylic esters. Long-chain esters exclusively lose the alkoxide moiety to give the acylium ion. The same reaction was observed for saturated, unsaturated, branched and cyclic esters. In each case, the acylium ion reacts further with a neutral ester molecule by proton transfer to yield the protonated ester as a secondary product. This remarkably simple product distribution reveals the molecular weight of the ester, the chain length of its acid moiety, and the degree of unsaturation in the acid and alcohol moieties.     

A new approach for the large-scale generation of mature dendritic cells from adherent PBMC using roller bottle technology

Background  

Human monocyte-derived DC (mDC) loaded with peptides, protein, tumor cell lysates, or tumor cell RNA, are being tested as vaccines against multiple human malignancies and viral infection with great promise. One of the factors that has limited more widespread use of these vaccines is the need to generate mDC in large scale. Current methods for the large-scale cultivation of mDC in static culture vessels are labor- and time- intensive, and also require many culture vessels. Here, we describe a new method for the large-scale generation of human mDC from human PBMC from leukopheresis or buffy coat products using roller bottles, never attempted before for mDC generation. We have tested this technology using 850 cm² roller bottles compared to conventional T-175 flat-bottom static culture flasks.     

A bound for

Let denote the largest irreducible character degree of a finite group , and let be a prime. Two results are obtained. First, we show that, if is a -solvable group and if , then . Next, we restrict attention to solvable groups and show that, if and if is a Sylow -subgroup of , then .

     

Formant discrimination in noise for isolated vowels

Formant discrimination for isolated vowels presented in noise was investigated for normal-hearing listeners. Discrimination thresholds for F1 and F2, for the seven American English vowels /i, I, epsilon, ae, [symbol see text], a, u/, were measured under two types of noise, long-term speech-shaped noise (LTSS) and multitalker babble, and also under quiet listening conditions. Signal-to-noise ratios (SNR) varied from -4 to +4 dB in steps of 2 dB. All three factors, formant frequency, signal-to-noise ratio, and noise type, had significant effects on vowel formant discrimination. Significant interactions among the three factors showed that threshold-frequency functions depended on SNR and noise type. The thresholds at the lowest levels of SNR were highly elevated by a factor of about 3 compared to those in quiet. The masking functions (threshold vs SNR) were well described by a negative exponential over F1 and F2 for both LTSS and babble noise. Speech-shaped noise was a slightly more effective masker than multitalker babble, presumably reflecting small benefits (1.5 dB) due to the temporal variation of the babble.