Design,Synthesis, and Biological Evaluation of Tetra-Substituted Thiophenes as Inhibitors of p38α MAPK

p38α mitogen-activated protein kinase (MAPK) plays a role in several cellular processes and consequently has been a therapeutic target in inflammatory diseases, cancer, and cardiovascular disease. A number of known p38α MAPK inhibitors contain vicinal 4-fluorophenyl/4-pyridyl rings connected to either a 5- or 6-membered heterocycle. In this study, a small library of substituted thiophene-based compounds bearing the vicinal 4-fluorophenyl/4-pyridyl rings was designed using computational docking as a visualisation tool. Compounds were synthesised and evaluated in a fluorescence polarisation binding assay. The synthesised analogues had a higher binding affinity to the active phosphorylated form of p38α MAPK than the inactive nonphosphorylated form of the protein. 4-(2-(4-fluorophenyl)thiophen-3-yl)pyridine had a K_i value of 0.6 μm to active p38α MAPK highlighting that substitution of the core ring to a thiophene retains affinity to the enzyme and can be utilised in p38α MAPK inhibitors. This compound was further elaborated using a substituted phenyl ring in order to probe the second hydrophobic pocket. Many of these analogues exhibited low micromolar affinity to active p38α MAPK. The suppression of neonatal rat fibroblast collagen synthesis was also observed suggesting that further development of these compounds may lead to potential therapeutics having cardioprotective properties.     

State-selective photodissociation dynamics of formaldehyde: near threshold studies of the H+HCO product channel

The laser-induced photodissociation of formaldehyde in the wavelength range 309相似文献   

Near-UV photolysis of substituted phenols, I: 4-fluoro-, 4-chloro- and 4-bromophenol

The experimental techniques of H (Rydberg) atom photofragment translational spectroscopy and resonance-enhanced multiphoton ionisation time-of-flight spectroscopy have been used to investigate the dynamics of H atom loss processes from gas phase 4-fluorophenol (4-FPhOH), 4-chlorophenol (4-ClPhOH) and 4-bromophenol (4-BrPhOH) molecules, following excitation at many wavelengths, lambda(phot), in the range between their respective S(1)-S(0) origins (284.768 nm, 287.265 nm and 287.409 nm) and 216 nm. Many of the Total Kinetic Energy Release (TKER) spectra obtained from photolysis of 4-FPhOH show structure, the analysis of which reveals striking parallels with that reported previously for photolysis of bare phenol (M. G. D. Nix, A. L. Devine, B. Cronin, R. N. Dixon and M. N. R. Ashfold, J. Chem. Phys., 2006, 125, 133318). The data demonstrates the importance of O-H bond fission, and that the resulting 4-FPhO co-fragments are formed in a select fraction of their available vibrational state density. All spectra recorded at lambda(phot)> or = 238 nm show a feature centred at TKER approximately 5500 cm(-1). These H atom fragments show no recoil anisotropy, and are rationalised in terms of initial S(1)<-- S(0) (pi* <--pi) excitation and subsequent dissociation via two successive radiationless transitions: internal conversion to ground (S(0)) state levels carrying sufficient O-H stretch vibrational energy to allow efficient transfer to (and round) the Conical Intersection (CI) between the S(0) and S(2)((1)pi sigma*) Potential Energy Surfaces (PESs) at larger R(O-H), en route to H atoms and ground state 4-FPhO products. The vibrational energy disposal in the 4-FPhO products indicates that parent mode nu(16a) promotes non-adiabatic coupling at the S(0)/S(2) CI. Spectra recorded at lambda(phot)< or = 238 nm reveal a faster (but still isotropic) distribution of recoiling H atoms, centred at TKER approximately 12 000 cm(-1), attributable to H + 4-FPhO products formed when the optically excited (1)pi pi* molecules couple directly with the (1)pi sigma* PES. Parent mode nu(16b) is identified as the dominant coupling mode at the S(1)((1)pi pi*)/S(2)((1)pi sigma*) CI, and the resulting 4-FPhO radical co-fragments display progressions in nu(18b) (the C-O in-plane wagging mode) and nu(7a) (an in-plane ring breathing mode involving significant C-O stretching motion). Analysis of all structured TKER spectra yields a C-F bond dissociation energy: D(0)(H-OC(6)H(4)F) = 29 370 +/- 50 cm(-1). The photodissociation of 4-ClPhOH shows many similarities, though the 4-ClPhO products formed together with faster H atoms at shorter wavelengths (lambda(phot)< or = 238 nm, by coupling through the S(1)/S(2) CI) show activity in an alternative ring breathing mode (nu(19a) rather than nu(7a)). Spectral analysis yields D(0)(H-OC(6)H(4)Cl) = 29 520 +/- 50 cm(-1). H atom formation via O-H bond fission is (at best) a very minor channel in the photolysis of 4-BrPhOH at all wavelengths investigated. Time-dependent density functional theory calculations suggest that this low H atom yield is because of competition from the alternative C-Br bond fission channel, and that the analogous C-Cl bond fission may be responsible for the weakness of the one photon-induced H atom signals observed when photolysing 4-ClPhOH at longer wavelengths.     

Radiation damage produced in quartz by energetic ions

Abstract

Present work deals with atomic and electronic alterations of the quartz structure by high energy ion irradiation. The atomic structure of irradiated quartz is probed by means of X-ray absorption spectroscopies (XANES, EXAFS). Electronic structure modifications are investigated by XPS and bulk paramagnetic point defects by ESR. The experimental data suggest that for light ions (O), irradiated quartz targets preserve their long range order. E' point defects, i.e. oxygen vacancy defects, are created along the ion path with a poor efficiency (2 GeV/E'), close to the efficiency of y rays. For heavier ions (Kr, Pb), irradiation damage consists of a trail of extended defects. These extended defects are composed of an amorphous SiO₂ state. The density of these amorphized regions is about 4% larger than the common relaxed silica. This poorly densified silica appears similar to that obtained by neutron irradiation of quartz. E’ defects are mostly located inside these amorphous zones (>85%).     

Fiber containment for improved laboratory handling and uniform nanocoating of milligram quantities of carbon nanotubes by atomic layer deposition

The presence of nanostructured materials in the workplace is bringing attention to the importance of safe practices for nanomaterial handling. We explored novel fiber containment methods to improve the handling of carbon nanotube (CNT) powders in the laboratory while simultaneously allowing highly uniform and controlled atomic layer deposition (ALD) coatings on the nanotubes, down to less than 4 nm on some CNT materials. Moreover, the procedure yields uniform coatings on milligram quantities of nanotubes using a conventional viscous flow reactor system, circumventing the need for specialized fluidized bed or rotary ALD reactors for laboratory-scale studies. We explored both fiber bundles and fiber baskets as possible containment methods and conclude that the baskets are more suitable for coating studies. An extended precursor and reactant dose and soak periods allowed the gases to diffuse through the fiber containment, and the ALD coating thickness scaled linearly with the number of ALD cycles. The extended dose period produced thicker coatings compared to typical doses on CNT controls not encased in the fibers, suggesting some effects due to the extended reactant dose. Film growth was compared on a range of single-walled NTs, double-walled NTs, and acid-functionalized multiwalled NTs, and we found that ultrathin coatings were most readily controlled on the multiwalled NTs.     

Hydrogen Bonding in Nitrocellulose and Its Implications on Deterring of Small Arms Propellant

The hydrogen bonding characteristics of well-characterized nitrocellulose samples were studied by means of IR spectroscopy. Results obtained for nitrocellulose samples of varying nitrogen content showed that the strength of the hydrogen bond increases with decreasing nitrogen content. In addition, atmospheric moisture was found to hydrogen bond with nitrocellulose hydroxyl groups. The implications of these findings on the deterring phase of the small arms propellant manufactruring process are discussed.     

Mass Activated Droplet Sorting (MADS) Enables High-Throughput Screening of Enzymatic Reactions at Nanoliter Scale

Microfluidic droplet sorting enables the high-throughput screening and selection of water-in-oil microreactors at speeds and volumes unparalleled by traditional well-plate approaches. Most such systems sort using fluorescent reporters on modified substrates or reactions that are rarely industrially relevant. We describe a microfluidic system for high-throughput sorting of nanoliter droplets based on direct detection using electrospray ionization mass spectrometry (ESI-MS). Droplets are split, one portion is analyzed by ESI-MS, and the second portion is sorted based on the MS result. Throughput of 0.7 samples s⁻¹ is achieved with 98 % accuracy using a self-correcting and adaptive sorting algorithm. We use the system to screen ≈15 000 samples in 6 h and demonstrate its utility by sorting 25 nL droplets containing transaminase expressed in vitro. Label-free ESI-MS droplet screening expands the toolbox for droplet detection and recovery, improving the applicability of droplet sorting to protein engineering, drug discovery, and diagnostic workflows.     

An efficient convergent synthesis of adenosine-5′-N-alkyluronamides

Herein we report an efficient synthesis of adenosine-5′-N-alkyluronamides in which an enzyme-mediated deacetylation reaction is a key to the selective modification of the 5′-N-position, prior to coupling the ribose and purine components via a microwave-assisted Vorbrüggen coupling. This approach provides access to highly functionalised adenosines with 2- and N⁶-substitutents, which can be incorporated before or after the ribose-coupling step. In all cases the microwave-assisted Vorbrüggen coupling conditions afforded anomerically pure purine ribosides in good to excellent yields.     

Parallel adaptive hp-refinement techniques for conservation laws

We describe an adaptive hp-refinement local finite element procedure for the parallel solution of hyperbolic systems of conservation laws on rectangular domains. The local finite element procedure utilizes spaces of piecewise-continuous polynomials of arbitrary degree and coordinated explicit Runge-Kutta temporal integration. A solution limiting procedure produces monotonic solutions near discontinuities while maintaining high-order accuracy near smooth extrema. A modified tiling procedure maintains processor load balance on parallel, distributed-memory MIMD computers by migrating finite elements between processors in overlapping neighborhoods to produce locally balanced computations. Grids are stored in tree data structures, with finer grids being offspring of coarser ones. Within each grid, AVL trees simplify the transfer of information between neighboring processors and the insertion and deletion of elements as they migrate between processors. Computations involving Burgers' and Euler's equations of inviscid flow demonstrate the effectiveness of the hp-refinement and balancing procedures relative to non-balanced adaptive and balanced non-adaptive procedures.     

On the initial phase of native oxide formation on Si〈1 1 1〉

An Auger Electron Spectroscopy study of the initial phase of native oxide formation on Si〈1 1 1〉 is reported. Observed Auger peaks for low levels of oxygen exposure are explained in terms of a model of monoatomic and peroxyl surface bonding and the position of associated bands deduced with respect to the SiO₂ valence band edge. For high levels of oxygen exposure, only monatomic bonding is found whilst the full SiO₂ valence band structure appears.