The d'--d--d' vertical triad is less discriminating than the a'--a--a' vertical triad in the antiparallel coiled-coil dimer motif

Elucidating relationships between the amino-acid sequences of proteins and their three-dimensional structures, and uncovering non-covalent interactions that underlie polypeptide folding, are major goals in protein science. One approach toward these goals is to study interactions between selected residues, or among constellations of residues, in small folding motifs. The α-helical coiled coil has served as a platform for such studies because this folding unit is relatively simple in terms of both sequence and structure. Amino acid side chains at the helix-helix interface of a coiled coil participate in so-called "knobs-into-holes" (KIH) packing whereby a side chain (the knob) on one helix inserts into a space (the hole) generated by four side chains on a partner helix. The vast majority of sequence-stability studies on coiled-coil dimers have focused on lateral interactions within these KIH arrangements, for example, between an a position on one helix and an a' position of the partner in a parallel coiled-coil dimer, or between a--d' pairs in an antiparallel dimer. More recently, it has been shown that vertical triads (specifically, a'--a--a' triads) in antiparallel dimers exert a significant impact on pairing preferences. This observation provides impetus for analysis of other complex networks of side-chain interactions at the helix-helix interface. Here, we describe a combination of experimental and bioinformatics studies that show that d'--d--d' triads have much less impact on pairing preference than do a'--a--a' triads in a small, designed antiparallel coiled-coil dimer. However, the influence of the d'--d--d' triad depends on the lateral a'--d interaction. Taken together, these results strengthen the emerging understanding that simple pairwise interactions are not sufficient to describe side-chain interactions and overall stability in antiparallel coiled-coil dimers; higher-order interactions must be considered as well.     

Two Efficient and Practical Syntheses of Methyl 4-Mercaptobenzoate

Two efficient syntheses of methyl 4-mercaptobenzoate are described, one utilizing the dianion of 4-bromothiophenol, the other a S_NAr reaction starting with 4-fluorobenzonitrile.     

An Efficient Preparation of 2,6-Di-t-Butyl-1,4-Benzoquinone

A convenient and high yielding preparation of 2,6-di-t-butyl-1,4-benzoquinone from the iron-catalyzed oxidation of 2,4,6-tri-t-butylphenol with t-butyl hydroperoxide (TBHP) under acidic conditions is reported.     

Phase Transfer Catalysis: Improved Synthesis of Ketones from β-Keto Esters in an Aoueous Medium

β-Keto esters can be easily decarbethoxylated to yield ketones in dilute aqueous potassium hydroxide that contains 0.1% hexadecyltrimethylammonium bromide in 45 minutes at 80°C; yields exceed 75% and work-up requires only a single step.     

Light Lanthanide Metallocenium Cations Exhibiting Weak Equatorial Anion Interactions

As the dysprosocenium complex [Dy(Cp^ttt)₂][B(C₆F₅)₄] (Cp^ttt=C₅H₂tBu₃-1,2,4, 1-Dy ) exhibits magnetic hysteresis at 60 K, similar lanthanide (Ln) complexes have been targeted to provide insights into this remarkable property. We recently reported homologous [Ln(Cp^ttt)₂][B(C₆F₅)₄] ( 1-Ln ) for all the heavier Ln from Gd–Lu; herein, we extend this motif to the early Ln. We find, for the largest Ln^III cations, that contact ion pairs [Ln(Cp^ttt)₂{(C₆F₅-κ¹-F)B(C₆F₅)₃}] ( 1-Ln ; La–Nd) are isolated from reactions of parent [Ln(Cp^ttt)₂(Cl)] ( 2-Ln ) with [H(SiEt₃)₂][B(C₆F₅)₄], where the anion binds weakly to the equatorial sites of [Ln(Cp^ttt)₂]⁺ through a single fluorine atom in the solid state. For smaller Sm^III, [Sm(Cp^ttt)₂][B(C₆F₅)₄] ( 1-Sm ) is isolated, which like heavier 1-Ln does not exhibit equatorial anion interactions, but the Eu^III analogue 1-Eu could not be synthesised due to the facile reduction of Eu^III precursors to Eu^II products. Thus with the exception of Eu and radioactive Pm this work constitutes a structurally similar family of Ln metallocenium complexes, over 50 years after the [M(Cp)₂]⁺ series was isolated for the 3d metals.     

Molecular surface-volume and property matching to superpose flexible dissimilar molecules

Summary Steric complementarity is a prerequisite for ligand-receptor recognition; this implies that drugs with a common receptor binding site should possess sterically similar binding surfaces. This principle is used as the basis for an automatic and unbiased method that superposes molecules. One molecule is rotated and translated to maximize the overlap between the two molecular surface volumes. A fast grid-based method is used to determine the extent of this overlap, and this is optimized using simulated annealing. Matches with high steric similarity scores are then sorted on the basis of both hydrogen-bond and electrostatic similarity between the matched molecules. Flexible molecules are treated as a set of rigid representative conformers. The algorithm has correctly predicted superpositions between a number of pairs of molecules, according to crystallographic data from ligands that have been co-crystallized at common enzyme binding sites.     

The platinum benzole acid blues — a new class of blue platinum compounds

Summary The preparation of platinum blues from Pt(NH₃)₂(H₂O) ₂ ²⁺ and benzoic or phthalic acids is described. The compounds were characterised by e.p.r., u.v./vis. and x-ray photoelectron spectroscopy. Unlike pyrimidine blues, the platinum blues reported here appear to be non-ionic.     

Radical addition to vinyl sulphones and vinyl phosphonium salts

Alkyl radicals, derived from decarboxylation of carboxylic acids, add readily to phenyl vinyl sulphone and vinyl phosphonium bromide. The adducts may be further converted into a variety of useful synthetic intermediates.