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71.
Water is an important component in living systems and deserves better understanding in chemistry and biology. However, due to the difficulty of investigating the water functions in protein structures, it is usually ignored in computational modeling, especially in the field of computer‐aided drug design. Here, using the potential of mean forces (PMFs) approach, we constructed a water PMF (wPMF) based on 3946 non‐redundant high resolution crystal structures. The extracted wPMF potential was first used to investigate the structure pattern of water and analyze the residue hydrophilicity. Then, the relationship between wPMF score and the B factor value of crystal waters was studied. It was found that wPMF agrees well with some previously reported experimental observations. In addition, the wPMF score was also tested in parallel with 3D‐RISM to measure the ability of retrieving experimentally observed waters, and showed comparable performance but with much less computational cost. In the end, we proposed a grid‐based clustering scheme together with a distance weighted wPMF score to further extend wPMF to predict the potential hydration sites of protein structure. From the test, this approach can predict the hydration site at the accuracy about 80% when the calculated score lower than ?4.0. It also allows the assessment of whether or not a given water molecule should be targeted for displacement in ligand design. Overall, the wPMF presented here provides an optional solution to many water related computational modeling problems, some of which can be highly valuable as part of a rational drug design strategy. © 2012 Wiley Periodicals, Inc. 相似文献
72.
Chi Fang Ting Xiong Jie Hou Jing Wei Gu Mei Hu Sheng 《Journal of Dispersion Science and Technology》2013,34(4):604-610
Amidoxime (AO)/amine co-functionalized polypropylene fiber adsorbents were prepared. The all-polymeric structures were characterized by using Fourier transform infrared spectroscopy (FTIR), optical microscope, contact angle meter and electron spin resonance (ESR) analysis methods, confirming the grafting, modification, and amidoximation stages gravimetrically, spectroscopically, and visually. The properties for the removal of uranyl(VI) from aqueous solutions were investigated. For amidoxime (AO) fiber, high adsorption rate was observed within the first 30 minutes and the plateau value of 40.6% uranium loading (0.0812 mg/g) was reached at around 30 minutes. The adsorption equilibrium for AO/amine fiber was attained within 20 minutes, resulting in the adsorption of 92.6% uranium loading (0.185 mg/g). The percentage of adsorption increases with increasing pH value (2–6), reaches a maximum at pH 6.0 and then remains almost constant for AO/amine fiber, whereas reduces slightly for AO fiber. 相似文献
73.
Chuan Jie Cheng Quan Lei Fu Xiong Xiong Bai Shao Jin Liu Liang Shen Wu Qin Fan Hong Xia Li 《Chemical Papers》2013,67(3):336-341
A novel cationic gemini surfactant has been readily synthesised in 70 % total yield. The functional gemini surfactant can act both as an emulsifier and an atom transfer radical polymerisation (ATRP) initiator in mini-emulsion polymerisation of methyl methacrylate (MMA), in which no other emulsifier was required. 1-(Dimethylamino)dodecane (N,N-dimethyldodecylamine, DMDA) was found to be a good ligand in the activator generated by electron transfer (AGET) ATRP reaction. Kinetic studies indicated that the polymerisation featured controlled/living radical polymerisation. 相似文献
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Dr. Yan‐Yan Fu Dr. Cheng‐Xiong Yang Prof. Dr. Xiu‐Ping Yan 《Chemistry (Weinheim an der Bergstrasse, Germany)》2013,19(40):13484-13491
The unique features of high porosity, shape selectivity, and multiple active sites make metal–organic frameworks (MOFs) promising as novel stationary phases for high‐performance liquid chromatography (HPLC). However, the wide particle size distribution and irregular shape of conventional MOFs lead to lower column efficiency of such MOF‐packed columns. Herein, the fabrication of monodisperse MOF@SiO2 core–shell microspheres as the stationary phase for HPLC to overcome the above‐mentioned problems is reported. Zeolitic imidazolate framework 8 (ZIF‐8) was used as an example of MOFs due to its permanent porosity, uniform pore size, and exceptional chemical stability. Unique carboxyl‐modified silica spheres were used as the support to grow the ZIF‐8 shell. The fabricated monodisperse ZIF‐8@SiO2 packed columns (5 cm long × 4.6 mm i.d.) show high column efficiency (23 000 plates m?1 for bisphenol A) for the HPLC separation of endocrine‐disrupting chemicals (bisphenol A, β‐estradiol, and p‐(tert‐octyl)phenol) and pesticides (thiamethoxam, hexaflumuron, chlorantraniliprole, and pymetrozine) within 7 min with good relative standard deviations for 11 replicate separations of the analytes (0.01–0.39, 0.65–1.7, 0.70–1.3, and 0.17–0.91 % for retention time, peak area, peak height, and half peak width, respectively). The ZIF‐8@SiO2 microspheres combine the advantages of the good column packing properties of the uniform monodisperse silica microspheres and the separation ability of the ZIF‐8 crystals. 相似文献
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采用溶液自由基聚合,合成甲基丙烯酰氧乙基磷酰胆碱(MPC)-甲基丙烯酰氧丙基三甲氧基硅(TSMA)二元共聚物(PMT82),将其涂覆在戊二醛交联壳聚糖(CS-GA)表面,通过三乙胺蒸汽催化处理获得具有仿细胞外层膜结构(CS-GA-PMT82b)的表面.用动态接触角(DCA)、X-射线光电子能谱(XPS)对改性后交联壳聚糖表面的亲疏水性、元素组成等进行表征,并通过血小板黏附实验对其抗凝血性进行评价.研究结果表明,这种利用涂覆催化交联的方式将含有三甲氧基硅可交联基团的磷酰胆碱聚合物交联固定在壳聚糖表面,获得了较为稳定的仿细胞外层膜结构的CS-GA-PMT82b涂层表面.与壳聚糖相比,改性后壳聚糖的血小板黏附显著减少,抗凝血性能显著提高.这种改善材料的方式有望成为生物医用材料表面改性领域的有效的新手段. 相似文献
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Chao He Xiaohui Zhang Ruofeng Huang Jing Pan Jiaqiang Li Xuege Ling Yan Xiong Xiangming Zhu 《Tetrahedron letters》2014
Under open-flask conditions, an efficient method to assemble a series of diversely functionalized diarylketones in the presence of commercially available NBS has been developed. Yields of up to 99% have been achieved employing diarylmethanes as starting material. Based on 18O-labeled experiment, the addition of stoichiometric water eventually leads to excellent yields in all carbonylation cases. 相似文献