Genome mining in Streptomyces coelicolor: molecular cloning and characterization of a new sesquiterpene synthase

The terpene synthase encoded by the SCO5222 (SC7E4.19) gene of Streptomyces coelicolor was cloned by PCR and expressed in Escherichia coli as an N-terminal-His6-tag protein. Incubation of the recombinant protein, SCO5222p, with farnesyl diphosphate (1, FPP) in the presence of Mg(II) gave a new sesquiterpene, (+)-epi-isozizaene (2), whose structure and stereochemistry were determined by a combination of 1H, 13C, COSY, HMQC, HMBC, and NOESY NMR. The steady-state kinetic parameters were kcat 0.049 +/- 0.001 s-1 and a Km (FPP) of 147 +/- 14 nM. Individual incubations of recombinant epi-isozizaene synthase with [1,1-2H2]FPP (1a), (1R)-[1-2H]-FPP (1b), and (1S)-[1-2H]-FPP (1c) and NMR analysis of the resulting deuterated epi-isozizaenes supported an isomerization-cyclization-rearrangement mechanism involving the intermediacy of (3R)-nerolidyl diphosphate (3).     

Surfactant and electric field strength effects on surface tension at liquid/liquid/solid interfaces

We performed a series of experiments designed to elucidate the effects of the presence of sodium dodecyl sulfate (SDS) surfactant and an applied electrical field on the wetting behavior in a system containing a sessile droplet of phenylmethyl polysiloxane (PMPS) oil on a polished stainless steel surface submersed in aqueous solution. The voltage difference ranged from -3 to +3 V, which is at least 3 orders of magnitude smaller than from comparable recent work. We report the measured equilibrium contact angle of the droplet as a function of surfactant concentration and field strength. We then modeled the system. We solved the Laplace equation to obtain the 3D field within our system. We expanded the three surface tensions (oil droplet-aqueous solution (oa), oil droplet-metal surface (os), and aqueous solution-metal surface (as)) in a Taylor series with respect to surfactant concentration and local field strength. We use these three surface tensions in Young's equation to obtain the theoretical contact angle of the organic droplet. We demonstrate that the large changes in contact angle due to the simultaneous presence of small concentrations of surfactant and small voltage differences can be accounted for by changes in the oa and as surface tensions.     

Electron density redistribution accounts for half the cooperativity of alpha helix formation

The energy of alpha helix formation is well known to be highly cooperative, but the origin and relative importance of the contributions to helical cooperativity have been unclear. Here we separate the energy of helix formation into short range and long range components by using two series of helical dimers of variable length. In one dimer series two monomeric helices interact by forming hydrogen bonds, while in the other they are coupled only through long range, primarily electrostatic interactions. Using Density Functional Theory, we find that approximately half of the cooperativity of helix formation is due to electrostatic interactions between residues, while the other half is due to nonadditive many-body effects brought about by redistribution of electron density with helix length.     

A Water-Soluble Synthetic Bilirubin with Carboxyl Groups Replaced by Sulfonyl Moieties

 The first symmetrical bilirubin analog with CO₂H groups replaced by SO₃H, 8,12-bis-(2-sulfo-ethyl)-3,17-diethyl-2,7,13,18-tetramethyl-(10H,21H,23H,24H)-bilin-1,19-dione, was synthesized from methyl (2,4-dimethyl-5-ethoxycarbonyl-1H-pyrrol-3-yl) acetate in nine steps via the sulfonic acid analog of xanthobilirubic acid (XBR) and isolated as its disodium salt. The sulfonic acid group was introduced at an early stage of the synthesis by reaction of an intermediate, ethyl 4-(2-bromoethyl)-3,5-dimethyl-1H-pyrrole-2-carboxylate, with sodium sulfite. The disodium bilirubin disulfonate exhibits NMR spectroscopic properties rather similar to those of the parent carboxylic acid, mesobilirubin-XIIIα; however, its UV/Vis spectra are blue-shifted and broadened relative to those of the parent compound. Like mesobilirubin, the disulfonate displays a positive exciton chirality circular dichroism spectrum, albeit with weaker Cotton effects, in a buffered aqueous solution (pH = 7.4) containing a 2:1 molar ratio of human serum albumin.     

Ruthenium Catalyst Dichotomy: Selective Catalytic Diene Cycloisomerization or Metathesis

Ruthenium based catalysts are versatile promoters of a large variety of reactions. A catalytic system active in metathesis has been generated in situ from [RuCl₂(p‐cymene)]₂, 1,3‐bismesitylimidazolinium chloride, as precursor of a bulky carbene ligand, and cesium carbonate. We report that this three component catalytic system exhibits dichotomous reactivity for the transformation of dienes, providing an active catalytic system for the cycloisomerization of dienes to methylidene five‐membered cyclic molecules, whereas, in the presence of acetylene, a metathesis catalyst is generated that transforms the same dienes into cyclic olefins with loss of ethylene.     

New azaphilones from Chaetomium globosum isolated from the built environment

A strain of Chaetomium globosum (DAOM 240359) was isolated from an indoor air sample in Ottawa, Ontario, Canada. When fermented in liquid culture, this strain produced a number of known metabolites including chaetoglobosins A (6), C, and F (7), chaetomugilin D (5), chaetoviridin A (4), and three new nitrogenous azaphilones; 4′-epi-N-2-hydroxyethyl-azachaetoviridin A (1), N-2-butyric-azochaetoviridin E (2), and isochromophilone XIII (3). The structures were elucidated by spectroscopic analysis including; HRMS, 1D and 2D NMR, UV, and ORD. Compounds 2–7 were antimicrobial when tested using quantitative growth inhibition assays.     

Synthesis of 1,3-diamino-7,8,9,10-tetrahydropyrido[3,2-f]-quinazolines. Inhibitors of Candida albicans dihydrofolate reductase as potential antifungal agents

A series of novel 1,3-diamino-7,8,9,10-tetrahydropyrido[3,2-f]quinazolines were synthesized starting from 6-amino-5-cyanoquinoline (4). These compounds inhibited Candida albicans dihydrofolate reductase with K_i values of ≤0.60 aM. One analogue exhibited moderate in vivo efficacy in a C. albicans-infected mouse model.     

A photoactive isoprenoid diphosphate analogue containing a stable phosphonate linkage: synthesis and biochemical studies with prenyltransferases

A number of biochemical processes rely on isoprenoids, including the post-translational modification of signaling proteins and the biosynthesis of a wide array of compounds. Photoactivatable analogues have been developed to study isoprenoid utilizing enzymes such as the isoprenoid synthases and prenyltransferases. While these initial analogues proved to be excellent structural analogues with good cross-linking capability, they lack the stability needed when the goals include isolation of cross-linked species, tryptic digestion, and subsequent peptide sequencing. Here, the synthesis of a benzophenone-based farnesyl diphosphate analogue containing a stable phosphonophosphate group is described. Inhibition kinetics, photolabeling experiments, as well as X-ray crystallographic analysis with a protein prenyltransferase are described, verifying this compound as a good isoprenoid mimetic. In addition, the utility of this new analogue was explored by using it to photoaffinity label crude protein extracts obtained from Hevea brasiliensis latex. Those experiments suggest that a small protein, rubber elongation factor, interacts directly with farnesyl diphosphate during rubber biosynthesis. These results indicate that this benzophenone-based isoprenoid analogue will be useful for identifying enzymes that utilize farnesyl diphosphate as a substrate.     

In situ electrochemical STM study of the coarsening of platinum islands at double-layer potentials

In situ electrochemical scanning tunneling microscopy is used to study the coarsening of platinum islands at potentials of 0.4, 0.5, and 0.6 V in the double-layer region. Several interesting surface island reconstruction processes were observed, namely, (1) growth of small polycrystalline platinum islands; (2) shape- and size-limited platinum island growth; and (3) growth of platinum islands accompanied by disappearance of nearby islands. It is evident that these potential-induced coarsening processes can be explained by Gibbs-Thomson theory as a variant of Ostwald ripening. Details of the island reconstruction processes are described, and the possible influences of these phenomena on fuel cell operation are discussed.